LXL04_016491 | RubberDandelionOmics

Gene overview

LXL04_016491

Reference: OH-1004 Chr: Chr03 Coordinates: 124775662-124780860 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2805 bp · LXL04_016491|LXL04_016491|OH1004|cDNA

ATGTCTTCTGAAGGTGCTAAAGAAGACTCCAGATCTTTAGCTTTAACTCCAACAACTTCAATTGCTATAGTTATGACTATCTTTGTTCTTATCTCTGTGTTCTTGGAGCAATCAATTCGTTACTTGAGTAATTGGTTGAAGAAAATGAAACGCAACCCAATGCTTGCAGCAGTAGAGAAAATAAAAGAAGAATTAATGCTTCTTGGCTTTATATCACTCCTTCTTGCAGTTACCTCTAGTAGTATATCCAATATTTGTAT...

CDS

Download CDS FASTA

2805 bp · LXL04_016491|LXL04_016491|OH1004|CDS

ATGTCTTCTGAAGGTGCTAAAGAAGACTCCAGATCTTTAGCTTTAACTCCAACAACTTCAATTGCTATAGTTATGACTATCTTTGTTCTTATCTCTGTGTTCTTGGAGCAATCAATTCGTTACTTGAGTAATTGGTTGAAGAAAATGAAACGCAACCCAATGCTTGCAGCAGTAGAGAAAATAAAAGAAGAATTAATGCTTCTTGGCTTTATATCACTCCTTCTTGCAGTTACCTCTAGTAGTATATCCAATATTTGTAT...

Protein

Download Protein FASTA

934 aa · LXL04_016491|LXL04_016491|OH1004|PROTEIN

MSSEGAKEDSRSLALTPTTSIAIVMTIFVLISVFLEQSIRYLSNWLKKMKRNPMLAAVEKIKEELMLLGFISLLLAVTSSSISNICIPSKFYDNAFSPCSTPDNNQENKDSKSEILNKLNQNMCLKDYEPFVSDEGLEQLHRFIFIIAVTHIHQWRIWEDDAQMDPHDVLTEISRSETMRRQSAIVKFHVSNPLVRNGFLTWMICFFRQFGNSVVRADYLMLRKAFIMNHNLTSKFDFHSYMIRSMEEEFHKIVGLSGPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016491`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016491

Location Chr03:124775662-124780860 (+)

Description Similar to MLO14: MLO-like protein 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26700`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At5g53760`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g11000`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At4g24250`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At4g02600`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016491 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G11000

ath:AT1G26700

ath:AT4G02600

ath:AT4G24250

ath:AT5G53760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.365

Rank 1 · LXL04_016491 · OH-1004

Lysosome / Vacuole0.263

Rank 2 · LXL04_016491 · OH-1004

Endoplasmic reticulum0.209

Rank 3 · LXL04_016491 · OH-1004

Cytoplasm0.159

Rank 4 · LXL04_016491 · OH-1004

Golgi apparatus0.125

Rank 5 · LXL04_016491 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03094.21Mlo11-333 aa

PF03094.21Mlo333-417 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016491	`PF03094.21`	Mlo	11	333	2.2e-113	379.9
LXL04_016491	`PF03094.21`	Mlo	333	417	2.2e-113	379.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94KB1`	Arabidopsis thaliana	MLO-like protein 14	54.442%	Swiss-Prot	weak database homology
`Q9FI00`	Arabidopsis thaliana	MLO-like protein 11	53.636%	Swiss-Prot	weak database homology
`O23693`	Arabidopsis thaliana	MLO-like protein 4	36.576%	Swiss-Prot	weak database homology
`Q94KB2`	Arabidopsis thaliana	MLO-like protein 13	35.477%	Swiss-Prot	weak database homology
`O49621`	Arabidopsis thaliana	MLO-like protein 1	35.169%	Swiss-Prot	weak database homology

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