LXL04_013150 | RubberDandelionOmics

Gene overview

LXL04_013150

Reference: OH-1004 Chr: Chr03 Coordinates: 24943740-24954693 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2001 bp · LXL04_013150|LXL04_013150|OH1004|cDNA

ATGTTGGTTGTATATACAGTATTTGTGGAGAAGATACTTCGGGTTCAACCAAATGTGAGGAAGTTATATCTTCTTATAAGAGCTACTGATGACAATTCCGCCTTGCAACGCTTCAATATTGAGGTGGTGGAAAATGATTTGTTTAAGGTGCTGAAAGAGAAATATGGCACAAATCTACAATCTGTATTGTCGGAAAAAGTTACTCCGGTTGCCGGAGATATCACTCATCAAAATCTGGGAATAAAAGACTCCAATTTGGT...

CDS

Download CDS FASTA

2001 bp · LXL04_013150|LXL04_013150|OH1004|CDS

ATGTTGGTTGTATATACAGTATTTGTGGAGAAGATACTTCGGGTTCAACCAAATGTGAGGAAGTTATATCTTCTTATAAGAGCTACTGATGACAATTCCGCCTTGCAACGCTTCAATATTGAGGTGGTGGAAAATGATTTGTTTAAGGTGCTGAAAGAGAAATATGGCACAAATCTACAATCTGTATTGTCGGAAAAAGTTACTCCGGTTGCCGGAGATATCACTCATCAAAATCTGGGAATAAAAGACTCCAATTTGGT...

Protein

Download Protein FASTA

666 aa · LXL04_013150|LXL04_013150|OH1004|PROTEIN

MLVVYTVFVEKILRVQPNVRKLYLLIRATDDNSALQRFNIEVVENDLFKVLKEKYGTNLQSVLSEKVTPVAGDITHQNLGIKDSNLVEEMWKDVDVVVNVAATTNFDERYDIALTSNTLGVKNVLNFAAKCVKIQLLLHVSTAYVSGEKPGLILETPYRLGDAFNSVNGLEINTEEKVIEEKLKELNNDKTATDKSIKLAMKKLGIERANKFGWPNTYVFTKALGEMVLGHLKGDMPLVIIRPTIITSTYKEPFPGWIQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013150`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013150

Location Chr03:24943740-24954693 (-)

Description Similar to FAR3: Fatty acyl-CoA reductase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33790`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	CER4 encodes an alcohol-forming fatty acyl-coenzyme A reductase involved in cuticular wax production in Arabidopsis.2006 · DOI: 10.1104/pp.106.086785
`At5g22500`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At3g44540`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At3g44550`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822 Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.2013 · DOI: 10.1074/jbc.m113.499715

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013150 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0035336 long-chain fatty-acyl-CoA metabolic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0080019 alcohol-forming very long-chain fatty acyl-CoA reductase activity Molecular Function

GO:0102965 alcohol-forming long-chain fatty acyl-CoA reductase activity Molecular Function

KEGG gene cross-reference

ag:AAD38039

ath:AT4G33790

ath:AT5G22500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.203

Rank 1 · LXL04_013150 · OH-1004

Endoplasmic reticulum0.201

Rank 2 · LXL04_013150 · OH-1004

Peroxisome0.150

Rank 3 · LXL04_013150 · OH-1004

Mitochondrion0.141

Rank 4 · LXL04_013150 · OH-1004

Cell membrane0.113

Rank 5 · LXL04_013150 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07993.19NAD_binding_47-299 aa

PF04321.24RmlD_sub_bind56-148 aa

PF01370.28Epimerase75-151 aa

PF03015.25Sterile615-666 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013150	`PF07993.19`	NAD_binding_4	7	299	6.7e-68	229.3
LXL04_013150	`PF04321.24`	RmlD_sub_bind	56	148	2.4e-06	27.6
LXL04_013150	`PF01370.28`	Epimerase	75	151	2.7e-07	30.9
LXL04_013150	`PF03015.25`	Sterile	615	666	8.9e-11	42.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZB9`	Arabidopsis thaliana	Fatty acyl-CoA reductase 3	50.112%	Swiss-Prot	moderate database homology
`Q39152`	Arabidopsis thaliana	Fatty acyl-CoA reductase 1	47.982%	Swiss-Prot	moderate database homology
`Q9LXN3`	Arabidopsis thaliana	Probable fatty acyl-CoA reductase 4	49.880%	Swiss-Prot	moderate database homology
`Q0WRB0`	Arabidopsis thaliana	Probable fatty acyl-CoA reductase 5	50.459%	Swiss-Prot	moderate database homology

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