LXL04_009796 | RubberDandelionOmics

Gene overview

LXL04_009796

Reference: OH-1004 Chr: Chr02 Coordinates: 133741118-133745254 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2379 bp · LXL04_009796|LXL04_009796|OH1004|cDNA

ATGGGATTCTCCTCAAGGGTTAATGTTCTTCTCTTCCTTTTAGTAATCTTTCGGCAAAAATGGTCTGTAATTGGCATTTCAAGAAGCAAGGTTCATATTGTTTACATGGGTCATAATACTTTCGCTGAGCCAATGATTGTTCAGGATACGCACCATTCGATCCTCTCACAAATACTTGGAAGCAAAGAAGCCGCAAATAGATCAATTTTGTATAGCTACAAGCATGGATTTTCCGGCTTTGCTGCAAATTTAACCCCGAC...

CDS

Download CDS FASTA

2379 bp · LXL04_009796|LXL04_009796|OH1004|CDS

ATGGGATTCTCCTCAAGGGTTAATGTTCTTCTCTTCCTTTTAGTAATCTTTCGGCAAAAATGGTCTGTAATTGGCATTTCAAGAAGCAAGGTTCATATTGTTTACATGGGTCATAATACTTTCGCTGAGCCAATGATTGTTCAGGATACGCACCATTCGATCCTCTCACAAATACTTGGAAGCAAAGAAGCCGCAAATAGATCAATTTTGTATAGCTACAAGCATGGATTTTCCGGCTTTGCTGCAAATTTAACCCCGAC...

Protein

Download Protein FASTA

792 aa · LXL04_009796|LXL04_009796|OH1004|PROTEIN

MGFSSRVNVLLFLLVIFRQKWSVIGISRSKVHIVYMGHNTFAEPMIVQDTHHSILSQILGSKEAANRSILYSYKHGFSGFAANLTPTQASLIADLPGVVRVIPNRILKLHTTRSWDFLDVKPHLVDGIHSKGLSGVGSIIGVFDSGVWPESGSYHDVGMKKVPSRWKGVCEEGEHFNKSNCNRIRLIPSFQLSSNISNRKIIGARWYIKGYEAEFGKLDTSDDSEFLSPRDAYGHGTHTSSTAAGAPITDTSFFGLAHGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009796`
TK1151 ID	TkA03G473150
OH-1004 ID	LXL04_009796
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009796

Location Chr02:133741118-133745254 (+)

Description Similar to SBT3.9: Subtilisin-like protease SBT3.9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10520`	Subtilisin-like protease SBT3.9.	No verified direct reference in this release
`At4g10530`	Subtilisin-like protease SBT3.10.	No verified direct reference in this release
`At4g10550`	Subtilisin-like protease SBT3.6.	No verified direct reference in this release
`At4g10510`	Subtilisin-like protease SBT3.7.	No verified direct reference in this release
`At4g10540`	Subtilisin-like protease SBT3.8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009796 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004175 endopeptidase activity Molecular Function

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT4G10510

ath:AT4G10520

ath:AT4G10530

ath:AT4G10540

ath:AT4G10550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.553

Rank 1 · LXL04_009796 · OH-1004

Lysosome / Vacuole0.134

Rank 2 · LXL04_009796 · OH-1004

Cell membrane0.102

Rank 3 · LXL04_009796 · OH-1004

Cytoplasm0.093

Rank 4 · LXL04_009796 · OH-1004

Endoplasmic reticulum0.083

Rank 5 · LXL04_009796 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922.22Inhibitor_I931-110 aa

PF00082.28Peptidase_S8137-609 aa

PF17766.8fn3_6686-781 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009796	`PF05922.22`	Inhibitor_I9	31	110	4.4e-18	66.4
LXL04_009796	`PF00082.28`	Peptidase_S8	137	609	2.5e-42	145.9
LXL04_009796	`PF17766.8`	fn3_6	686	781	1.7e-25	89.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSB0`	Arabidopsis thaliana	Subtilisin-like protease SBT3.9	46.351%	Swiss-Prot	moderate database homology
`Q9ZSB1`	Arabidopsis thaliana	Subtilisin-like protease SBT3.10	45.443%	Swiss-Prot	moderate database homology
`Q8L7I2`	Arabidopsis thaliana	Subtilisin-like protease SBT3.6	45.693%	Swiss-Prot	moderate database homology
`Q9SZY2`	Arabidopsis thaliana	Subtilisin-like protease SBT3.7	45.512%	Swiss-Prot	moderate database homology
`Q9SZY3`	Arabidopsis thaliana	Subtilisin-like protease SBT3.8	45.149%	Swiss-Prot	moderate database homology

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