LXL04_009783 | RubberDandelionOmics

Gene overview

LXL04_009783

Reference: OH-1004 Chr: Chr02 Coordinates: 133333742-133336927 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2589 bp · LXL04_009783|LXL04_009783|OH1004|cDNA

ATGGAGGGTTTCGATTGGAGACTGCAGCTGAAACAATGTCGTTTCTGTCGAGAATTTGGCTTTTGTGAAGGTCGCAGATTTCCTGACAAATCTTCTTACGACCATGGAGTTCACTGGAAGGCTCATGATATAGCCGAAAATAAGACAGATCGAGTTTCATTATTGTGTAGAAAGCAGCTCAAACAAATTACAGAAGCTATCGAGTATTTTACCCTTAATTTACCAGACCCAACATCCTACATCACAAACTCCCATGCAAC...

CDS

Download CDS FASTA

2589 bp · LXL04_009783|LXL04_009783|OH1004|CDS

ATGGAGGGTTTCGATTGGAGACTGCAGCTGAAACAATGTCGTTTCTGTCGAGAATTTGGCTTTTGTGAAGGTCGCAGATTTCCTGACAAATCTTCTTACGACCATGGAGTTCACTGGAAGGCTCATGATATAGCCGAAAATAAGACAGATCGAGTTTCATTATTGTGTAGAAAGCAGCTCAAACAAATTACAGAAGCTATCGAGTATTTTACCCTTAATTTACCAGACCCAACATCCTACATCACAAACTCCCATGCAAC...

Protein

Download Protein FASTA

862 aa · LXL04_009783|LXL04_009783|OH1004|PROTEIN

MEGFDWRLQLKQCRFCREFGFCEGRRFPDKSSYDHGVHWKAHDIAENKTDRVSLLCRKQLKQITEAIEYFTLNLPDPTSYITNSHATSITKTLTHKPHISHPQNLRPNGRILRPKRGRRRKRPPRRRRRRRRRRPPWPPDIPPSPGPSPGSTNATSPTKGPSPAQSPDTGDWALTPDGAPEAPLTPGRGGGSRGASPPAPARNPSPKRKPFHGPASEYSPERARRPPDLSAADDSKEKKLLIIAVTSTTVAAFALFSLFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009783`
TK1151 ID	TkA03G471820
OH-1004 ID	LXL04_009783
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 97.917 / OH-1004 97.796 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009783

Location Chr02:133333742-133336927 (-)

Description Similar to FH3: Formin-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: O23373`	Acts as actin nucleation factor that directs the formation of actin cables and polarized growth in pollen tubes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0545500`	Formin-like protein 11.	No verified direct reference in this release
`Os04g0100300`	Formin-like protein 18.	No verified direct reference in this release
`Os02g0161100`	Formin-like protein 10.	No verified direct reference in this release
`Os03g0204100`	Formin-like protein 8.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009783 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0045010 actin nucleation Biological Process

GO:0051017 actin filament bundle assembly Biological Process

GO:0099636 cytoplasmic streaming Biological Process

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0003779 actin binding Molecular Function

GO:0051015 actin filament binding Molecular Function

KEGG gene cross-reference

dosa:Os02g0161100

dosa:Os03g0204100

dosa:Os04g0100300

dosa:Os07g0545500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.809

Rank 1 · LXL04_009783 · OH-1004

Cytoplasm0.124

Rank 2 · LXL04_009783 · OH-1004

Nucleus0.116

Rank 3 · LXL04_009783 · OH-1004

Endoplasmic reticulum0.059

Rank 4 · LXL04_009783 · OH-1004

Golgi apparatus0.023

Rank 5 · LXL04_009783 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181.29FH2399-794 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009783	`PF02181.29`	FH2	399	794	2.7e-94	317.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23373`	Arabidopsis thaliana	Formin-like protein 3	57.802%	Swiss-Prot	moderate database homology
`Q0D5P3`	Oryza sativa subsp. japonica	Formin-like protein 11	56.885%	Swiss-Prot	moderate database homology
`Q6MWG9`	Oryza sativa subsp. japonica	Formin-like protein 18	55.324%	Swiss-Prot	weak database homology
`Q6H7U3`	Oryza sativa subsp. japonica	Formin-like protein 10	51.628%	Swiss-Prot	weak database homology
`Q10Q99`	Oryza sativa subsp. japonica	Formin-like protein 8	47.182%	Swiss-Prot	moderate database homology

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