Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1756 bp · LXL04_009261|LXL04_009261|OH1004|cDNA
ATCCGAAATTTCTGGTTAAACCATCTTGACGTAACCACTTCCGAGATGCATATATGTACACTTAACAAACTAAGCAAAAGAAGGGGCACCGTCTCTGCGTTTCTCCTCCGGTATCAATAACGGTTGGAAAATTCAGATCGGAAGATCGAGTGTGGAATTCGATCGTCAGATTATGGAAGAATGCAAACGGAGAACGTGTTGTTTGCAGTTATGTTGTTTGATTTTGATTGGTTGTTTCGCTTTTACGTCTTATGCTTCCT...
1662 bp · LXL04_009261|LXL04_009261|OH1004|CDS
CTGCGTTTCTCCTCCGGTATCAATAACGGTTGGAAAATTCAGATCGGAAGATCGAGTGTGGAATTCGATCGTCAGATTATGGAAGAATGCAAACGGAGAACGTGTTGTTTGCAGTTATGTTGTTTGATTTTGATTGGTTGTTTCGCTTTTACGTCTTATGCTTCCTCCGGCACTTTATTTTACGATTCGTTTGATCAATCGTTTGAGGAGAGCTGGATCGTGAGTGAGAATGAAGACTATTCAGGTGTATGGAACCACTC...
Protein
Download Protein FASTA553 aa · LXL04_009261|LXL04_009261|OH1004|PROTEIN
MRFSSGINNGWKIQIGRSSVEFDRQIMEECKRRTCCLQLCCLILIGCFAFTSYASSGTLFYDSFDQSFEESWIVSENEDYSGVWNHSKSEGHDDYGLLVSEKARKYAIVKELDKPVELNDGTIVFQFETRFHNRLECGGAYLKYLRPQEAGWTPKQFDNNSPYSIMFGPDKCGSTDKIHFIINHKYHKTGKYVEHHLTYPPKIPTDKMTHVYTAIMKPGYELSILIDGEEKKKANILSSEDFHPPFVPPKTISDLDDKKP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009261 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009261 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:121489249-121491607 (-) | |||||||||
| Description | Similar to CNX1: Calnexin homolog 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0036503 ERAD pathway Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005773 vacuole Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0005509 calcium ion binding Molecular Function GO:0030246 carbohydrate binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G07340 ath:AT5G61790 gmx:547851 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00262.26Calreticulin60-414 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009261 | PF00262.26 | Calreticulin | 60 | 414 | 5.1e-138 | 460.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.