LXL04_008910 | RubberDandelionOmics

Gene overview

LXL04_008910

Reference: OH-1004 Chr: Chr02 Coordinates: 111926913-111927194 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

282 bp · LXL04_008910|LXL04_008910|OH1004|cDNA

ATGGCATCAAGCTCTATGACATCCTCACGTAGCTCTGGATCTTCGTGGACTCCAAGACAAAACAAGCAATTCGAAGAGGCTTTGGCTTACTATAACAAGGACAGTCCTGACCGGTGGCATAACATTGCCAGGGCTGTCGGTGGAAAGTCAGTGGAGGAGGTGAAGAGGCATTACGAAATCCTTGAAAGGGATATCATGCAAATTGAATTGGACCAGGTTCCTCTACCCAATTATAGAGATATTGGAAGCAATGGACGTGG...

CDS

Download CDS FASTA

282 bp · LXL04_008910|LXL04_008910|OH1004|CDS

ATGGCATCAAGCTCTATGACATCCTCACGTAGCTCTGGATCTTCGTGGACTCCAAGACAAAACAAGCAATTCGAAGAGGCTTTGGCTTACTATAACAAGGACAGTCCTGACCGGTGGCATAACATTGCCAGGGCTGTCGGTGGAAAGTCAGTGGAGGAGGTGAAGAGGCATTACGAAATCCTTGAAAGGGATATCATGCAAATTGAATTGGACCAGGTTCCTCTACCCAATTATAGAGATATTGGAAGCAATGGACGTGG...

Protein

Download Protein FASTA

93 aa · LXL04_008910|LXL04_008910|OH1004|PROTEIN

MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAVGGKSVEEVKRHYEILERDIMQIELDQVPLPNYRDIGSNGRGFANEQR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008910`
TK1151 ID	TkA03G313680
OH-1004 ID	LXL04_008910
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 93.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008910

Location Chr02:111926913-111927194 (+)

Description Similar to RL6: Protein RADIALIS-like 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75250`	Probable transcription factor.	No verified direct reference in this release
`At1g19510`	Probable transcription factor.	No verified direct reference in this release
`At4g39250`	Probable transcription factor.	No verified direct reference in this release
`At4g36570`	Probable transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008910 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009908 flower development Biological Process

GO:0048262 determination of dorsal/ventral asymmetry Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19510

ath:AT1G75250

ath:AT4G36570

ath:AT4G39250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935

Rank 1 · LXL04_008910 · OH-1004

Cytoplasm0.180

Rank 2 · LXL04_008910 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_008910 · OH-1004

Mitochondrion0.013

Rank 4 · LXL04_008910 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_008910 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding15-58 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008910	`PF00249.38`	Myb_DNA-binding	15	58	1.8e-06	28.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q1A173`	Arabidopsis thaliana	Protein RADIALIS-like 6	63.415%	Swiss-Prot	strong database homology
`Q8GW75`	Arabidopsis thaliana	Protein RADIALIS-like 5	63.889%	Swiss-Prot	strong database homology
`F4JVB8`	Arabidopsis thaliana	Protein RADIALIS-like 1	57.500%	Swiss-Prot	strong database homology
`Q6NNN0`	Arabidopsis thaliana	Protein RADIALIS-like 3	63.768%	Swiss-Prot	strong database homology

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