Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1164 bp · LXL04_008702|LXL04_008702|OH1004|cDNA
ATGGACCAAAATCAAAGGCCGACAGGCATTCTTCATTCTTTAGGCGAAGAAATCATCAGAATCATAACCCCTGTTTCAATCTGCATGTTCTTAGTGATCATTTTAGTCTCTATATTGGACTCCGACTCATCAAGCTCTCCTTCTTTCACCACCATAGCCACCATAGCTTACGACGAAAGCACATCTGATACCGAATGGGACAAATTCGTAGGCGCCCTATTGAACTCCCTTGTATTCGTTGCTGTTGTCACTGTCGTCAC...
1164 bp · LXL04_008702|LXL04_008702|OH1004|CDS
ATGGACCAAAATCAAAGGCCGACAGGCATTCTTCATTCTTTAGGCGAAGAAATCATCAGAATCATAACCCCTGTTTCAATCTGCATGTTCTTAGTGATCATTTTAGTCTCTATATTGGACTCCGACTCATCAAGCTCTCCTTCTTTCACCACCATAGCCACCATAGCTTACGACGAAAGCACATCTGATACCGAATGGGACAAATTCGTAGGCGCCCTATTGAACTCCCTTGTATTCGTTGCTGTTGTCACTGTCGTCAC...
Protein
Download Protein FASTA387 aa · LXL04_008702|LXL04_008702|OH1004|PROTEIN
MDQNQRPTGILHSLGEEIIRIITPVSICMFLVIILVSILDSDSSSSPSFTTIATIAYDESTSDTEWDKFVGALLNSLVFVAVVTVVTFLLVLLFYFRCTGFLKYYMGFSAFLVLGFMGGEIALFLIQVFHIAIDCITYVLLLFNFTIVGVLAVFMSKIPIFLTQSYMVIIGVLTAYWFTMLPEWTTWVLLVAMALYDLAAVLLPVGPLRLLVELAISRDEDIPALVYEARPIIDHGNSTIVQRRVWREAGNSESQIESSQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008702 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008702 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:106450307-106451470 (+) | |||||||||
| Description | Similar to At2g29900: Presenilin-like protein At2g29900 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0001921 positive regulation of receptor recycling Biological Process GO:0006509 membrane protein ectodomain proteolysis Biological Process GO:0006974 DNA damage response Biological Process GO:0007155 cell adhesion Biological Process GO:0007219 Notch signaling pathway Biological Process GO:0007220 Notch receptor processing Biological Process GO:0010468 regulation of gene expression Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0010629 negative regulation of gene expression Biological Process GO:0016485 protein processing Biological Process GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G08700 ath:AT2G29900 cfa:403408 hsa:5663 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01080.23Presenilin14-265 aaPF01080.23Presenilin253-377 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008702 | PF01080.23 | Presenilin | 14 | 265 | 1.6e-117 | 393.5 |
| LXL04_008702 | PF01080.23 | Presenilin | 253 | 377 | 1.6e-117 | 393.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.