LXL04_007576 | RubberDandelionOmics

Gene overview

LXL04_007576

Reference: OH-1004 Chr: Chr02 Coordinates: 52899775-52902945 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1818 bp · LXL04_007576|LXL04_007576|OH1004|cDNA

ATGGGTTGCGTTCAGGGAAAGCCCTCGCCGACTTATAATCGGCAACAGTCTCGTGGCGGCGGCCTTCATAAGTTGAAGACCGATAATGGGTATGTCACCGGCGGAAATGGGGGGAAATCCAATGTTGCACAGAAACCGTTTGTCGAAATGTCTGTGAAGAAGAATAACAACAATCATGTCGATGATAGTAATACGAGAAAGGAAGGAGGAGGTCAGAATGATAAACTGGTTACTCGAGAAGGAATTGGGAATGTTTCTCA...

CDS

Download CDS FASTA

1818 bp · LXL04_007576|LXL04_007576|OH1004|CDS

ATGGGTTGCGTTCAGGGAAAGCCCTCGCCGACTTATAATCGGCAACAGTCTCGTGGCGGCGGCCTTCATAAGTTGAAGACCGATAATGGGTATGTCACCGGCGGAAATGGGGGGAAATCCAATGTTGCACAGAAACCGTTTGTCGAAATGTCTGTGAAGAAGAATAACAACAATCATGTCGATGATAGTAATACGAGAAAGGAAGGAGGAGGTCAGAATGATAAACTGGTTACTCGAGAAGGAATTGGGAATGTTTCTCA...

Protein

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605 aa · LXL04_007576|LXL04_007576|OH1004|PROTEIN

MGCVQGKPSPTYNRQQSRGGGLHKLKTDNGYVTGGNGGKSNVAQKPFVEMSVKKNNNNHVDDSNTRKEGGGQNDKLVTREGIGNVSQRIVVVKKIGSDELIDGWPKWLVDNIPREVLANLASKTADSYDKLAKIGHGTYSNVYKARDRDTGKIVALKKVRFDTSEPESVKFMAREIIILQKLDHPNIIKLEGLATSRMQYSLYLVFDYMQSDLTRVISRPEGRLTEPQVKCYMQQLLSGLEHCHERGILHRDIKGSNLLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007576`
TK1151 ID	TkA03G192030
OH-1004 ID	LXL04_007576
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007576

Location Chr02:52899775-52902945 (+)

Description Similar to At1g54610: Probable serine/threonine-protein kinase At1g54610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54610`	Probable serine/threonine-protein kinase At1g54610.	No verified direct reference in this release
`At1g09600`	Probable serine/threonine-protein kinase At1g09600.	No verified direct reference in this release
`At1g18670`	Required for beta-aminobutyric acid (BABA)-induced resistance (BABA-IR) against bacteria (e.g. P.syringae) and oomycetes (e.g. H.parasitica) via priming for salicylate (SA)-dependent defense responses such as pathogenesis-related PR-1 gene expression and trailing necrosis.	Dissecting the beta-aminobutyric acid-induced priming phenomenon in Arabidopsis.2005 · DOI: 10.1105/tpc.104.029728 Descendants of primed Arabidopsis plants exhibit resistance to biotic stress.2012 · DOI: 10.1104/pp.111.191593
`At5g39420`	Cyclin-dependent kinase C-2 C.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0389700`	Cyclin-dependent kinase C-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007576 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009615 response to virus Biological Process

GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:1902290 positive regulation of defense response to oomycetes Biological Process

GO:2000031 regulation of salicylic acid mediated signaling pathway Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004693 cyclin-dependent protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G09600

ath:AT1G18670

ath:AT1G54610

ath:AT5G39420

dosa:Os05g0389700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592

Rank 1 · LXL04_007576 · OH-1004

Nucleus0.267

Rank 2 · LXL04_007576 · OH-1004

Cell membrane0.222

Rank 3 · LXL04_007576 · OH-1004

Golgi apparatus0.064

Rank 4 · LXL04_007576 · OH-1004

Lysosome / Vacuole0.046

Rank 5 · LXL04_007576 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase128-431 aa

PF07714.24PK_Tyr_Ser-Thr132-367 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007576	`PF00069.32`	Pkinase	128	431	3.5e-66	224.0
LXL04_007576	`PF07714.24`	PK_Tyr_Ser-Thr	132	367	8.1e-33	114.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVM9`	Arabidopsis thaliana	Probable serine/threonine-protein kinase At1g54610	55.013%	Swiss-Prot	moderate database homology
`F4I114`	Arabidopsis thaliana	Probable serine/threonine-protein kinase At1g09600	51.429%	Swiss-Prot	moderate database homology
`F4ICB6`	Arabidopsis thaliana	Protein IMPAIRED IN BABA-INDUCED STERILITY 1	45.701%	Swiss-Prot	moderate database homology
`B5X564`	Arabidopsis thaliana	Cyclin-dependent kinase C-2 C	47.837%	Swiss-Prot	moderate database homology
`Q6I5Y0`	Oryza sativa subsp. japonica	Cyclin-dependent kinase C-1	44.898%	Swiss-Prot	moderate database homology

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