LXL04_007318 | RubberDandelionOmics

Gene overview

LXL04_007318

Reference: OH-1004 Chr: Chr02 Coordinates: 44231898-44232880 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

540 bp · LXL04_007318|LXL04_007318|OH1004|cDNA

ATGGTTGCACTACTTAGCTCACTGCTCATATTCTCATTCTGCTTCTATCTTGGAATTCCATTAAGCTCCAACTACTATCAGAAAACATGCCCAAATGCAGAATCACTCATCAAGAAAACTGTAACCGATGCCACCAGAAATGACAAAATGCACTTCCATGACTGTTTCATAAGGGGTTGTGATGGCTCCATACTTTTGCATTCGAAGGGTAAGAACACTGCGGAAAAAGACGGACCCCCAAATGTTTCTCTTCACGCGTT...

CDS

Download CDS FASTA

540 bp · LXL04_007318|LXL04_007318|OH1004|CDS

ATGGTTGCACTACTTAGCTCACTGCTCATATTCTCATTCTGCTTCTATCTTGGAATTCCATTAAGCTCCAACTACTATCAGAAAACATGCCCAAATGCAGAATCACTCATCAAGAAAACTGTAACCGATGCCACCAGAAATGACAAAATGCACTTCCATGACTGTTTCATAAGGGGTTGTGATGGCTCCATACTTTTGCATTCGAAGGGTAAGAACACTGCGGAAAAAGACGGACCCCCAAATGTTTCTCTTCACGCGTT...

Protein

Download Protein FASTA

179 aa · LXL04_007318|LXL04_007318|OH1004|PROTEIN

MVALLSSLLIFSFCFYLGIPLSSNYYQKTCPNAESLIKKTVTDATRNDKMHFHDCFIRGCDGSILLHSKGKNTAEKDGPPNVSLHAFYVIDEAKKAVESVCPGVVSCADILALAARDAVVLAGGPFWDVPKGRKDGRISKASDTTQLPPPTFNIAQLQQSFSQRGLSLEDLVALSGNLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007318`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_007318

Location Chr02:44231898-44232880 (-)

Description Similar to PER64: Peroxidase 64

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42180`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g51890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g33420`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g05260`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0499300`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007318 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009409 response to cold Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G05260

ath:AT4G33420

ath:AT5G42180

ath:AT5G51890

dosa:Os05g0499300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.545

Rank 1 · LXL04_007318 · OH-1004

Cytoplasm0.143

Rank 2 · LXL04_007318 · OH-1004

Lysosome / Vacuole0.136

Rank 3 · LXL04_007318 · OH-1004

Endoplasmic reticulum0.079

Rank 4 · LXL04_007318 · OH-1004

Cell membrane0.048

Rank 5 · LXL04_007318 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase45-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007318	`PF00141.29`	peroxidase	45	176	3.8e-50	171.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43872`	Arabidopsis thaliana	Peroxidase 64	64.835%	Swiss-Prot	strong database homology
`Q9LT91`	Arabidopsis thaliana	Peroxidase 66	55.080%	Swiss-Prot	strong database homology
`Q9SZB9`	Arabidopsis thaliana	Peroxidase 47	52.174%	Swiss-Prot	strong database homology
`O23044`	Arabidopsis thaliana	Peroxidase 3	48.691%	Swiss-Prot	moderate database homology
`P37834`	Oryza sativa subsp. japonica	Peroxidase 1	52.147%	Swiss-Prot	strong database homology

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