LXL04_005932 | RubberDandelionOmics

Gene overview

LXL04_005932

Reference: OH-1004 Chr: Chr01 Coordinates: 175889387-175895408 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2613 bp · LXL04_005932|LXL04_005932|OH1004|cDNA

ATGGGGTGGGGAAGCATCTACATTAGACGTATGAAAGTTTTCTCATTAGCGCTTCTAATCTACTTCGATTATAAGGCTTTGAAGCACAGGGAGAAATGGGTAAACAACTCTGAAAGAGCTGCTTTATGGGAGAAAGCTCATGAGCGTAATGCTAAACGTATTGTTAACTTGATTATAGAATTGGAAGGTTTATGGGTTAAAATGGGACAGTATTTTTCTGTACGTGCTGATGGACTTCCTGGAGCCTATCCACGTCATCT...

CDS

Download CDS FASTA

2613 bp · LXL04_005932|LXL04_005932|OH1004|CDS

ATGGGGTGGGGAAGCATCTACATTAGACGTATGAAAGTTTTCTCATTAGCGCTTCTAATCTACTTCGATTATAAGGCTTTGAAGCACAGGGAGAAATGGGTAAACAACTCTGAAAGAGCTGCTTTATGGGAGAAAGCTCATGAGCGTAATGCTAAACGTATTGTTAACTTGATTATAGAATTGGAAGGTTTATGGGTTAAAATGGGACAGTATTTTTCTGTACGTGCTGATGGACTTCCTGGAGCCTATCCACGTCATCT...

Protein

Download Protein FASTA

870 aa · LXL04_005932|LXL04_005932|OH1004|PROTEIN

MGWGSIYIRRMKVFSLALLIYFDYKALKHREKWVNNSERAALWEKAHERNAKRIVNLIIELEGLWVKMGQYFSVRADGLPGAYPRHLKQLQDSLPPRSLKEVQKTIKTEMGKSMDDLFTTFVEKPIATASIAQVHRATLRDGKEVVVKVQHEGIKTIILEDLKNAKSIVEWIVWAEPKYNFNPIVDEWCKEAPKELDFNKEAENTRKVSSNLGCKKEILEKKPEHRVKVLMPEVIHSTERVLILEYMDGVRLNDPQSLDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005932`
TK1151 ID	TkA01G006340
OH-1004 ID	LXL04_005932
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.200
Protein coverage (%)	TK1151 100.000 / OH-1004 58.851 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005932

Location Chr01:175889387-175895408 (-)

Description Similar to ABC1K8: Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005932 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010637 negative regulation of mitochondrial fusion Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0055088 lipid homeostasis Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

KEGG gene cross-reference

ath:AT5G64940

ddi:DDB_G0281799

gga:423382

hsa:57143

mmu:72113

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.234

Rank 1 · LXL04_005932 · OH-1004

Cytoplasm0.226

Rank 2 · LXL04_005932 · OH-1004

Peroxisome0.201

Rank 3 · LXL04_005932 · OH-1004

Plastid0.157

Rank 4 · LXL04_005932 · OH-1004

Endoplasmic reticulum0.126

Rank 5 · LXL04_005932 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109.23ABC189-336 aa

PF00144.30Beta-lactamase406-711 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005932	`PF03109.23`	ABC1	89	336	6.7e-66	222.6
LXL04_005932	`PF00144.30`	Beta-lactamase	406	711	1.1e-37	130.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y08`	Arabidopsis thaliana	Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	34.796%	Swiss-Prot	weak database homology

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