LXL04_005925 | RubberDandelionOmics

Gene overview

LXL04_005925

Reference: OH-1004 Chr: Chr01 Coordinates: 175789955-175791442 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1488 bp · LXL04_005925|LXL04_005925|OH1004|cDNA

ATGGCGGCCGCTGCCTCCATGCTAAAAACAACCTTCTTCATCCTTAAACCCACCTACAAAATCCCAGTTTTTTCTCTGTTTCAATCGCCTTTCATCCGATCGATACCCAACAAACGAACTCTCCATCACCACAACCGACGGCATTACCAATTGACCCGGAAATTCTGCTATTCACAGCTAGCCCAAGAGCAATCCCACCGGAGTCGCGCCAATGTCATCGAAATCCTTGAAGAAAGAGGCCTGCTTGAAGCCATCACCGG...

CDS

Download CDS FASTA

1488 bp · LXL04_005925|LXL04_005925|OH1004|CDS

ATGGCGGCCGCTGCCTCCATGCTAAAAACAACCTTCTTCATCCTTAAACCCACCTACAAAATCCCAGTTTTTTCTCTGTTTCAATCGCCTTTCATCCGATCGATACCCAACAAACGAACTCTCCATCACCACAACCGACGGCATTACCAATTGACCCGGAAATTCTGCTATTCACAGCTAGCCCAAGAGCAATCCCACCGGAGTCGCGCCAATGTCATCGAAATCCTTGAAGAAAGAGGCCTGCTTGAAGCCATCACCGG...

Protein

Download Protein FASTA

495 aa · LXL04_005925|LXL04_005925|OH1004|PROTEIN

MAAAASMLKTTFFILKPTYKIPVFSLFQSPFIRSIPNKRTLHHHNRRHYQLTRKFCYSQLAQEQSHRSRANVIEILEERGLLEAITGDNLRSICTDSSLRVYCGFDPTAESLHLGNLIGIIVLSWFLRCGHSAVALVGGATGRVGDPSGKSLERPELDIETLERNISGISGIVLKILGDISTDNNSIKVLNNYDWWKDVKLLDFLKDVGRFARVNTMMAKESVKRRLESSDQGLSYTEFTYQLLQGYDFVHLFKSENITV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005925`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005925

Location Chr01:175789955-175791442 (-)

Description Similar to EMB2768: Tyrosine--tRNA ligase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02660`	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005925 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006437 tyrosyl-tRNA aminoacylation Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0043039 tRNA aminoacylation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0004831 tyrosine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G02660

gka:GK2803

pcu:PC_RS05635

rrs:RoseRS_2069

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.698

Rank 1 · LXL04_005925 · OH-1004

Mitochondrion0.389

Rank 2 · LXL04_005925 · OH-1004

Cytoplasm0.052

Rank 3 · LXL04_005925 · OH-1004

Nucleus0.034

Rank 4 · LXL04_005925 · OH-1004

Peroxisome0.017

Rank 5 · LXL04_005925 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00579.32tRNA-synt_1b98-394 aa

PF22421.2SYY_C-terminal408-490 aa

PF01479.31S4437-475 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005925	`PF00579.32`	tRNA-synt_1b	98	394	2.6e-77	260.8
LXL04_005925	`PF22421.2`	SYY_C-terminal	408	490	1.9e-09	38.0
LXL04_005925	`PF01479.31`	S4	437	475	7.9e-06	26.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M876`	Arabidopsis thaliana	Tyrosine--tRNA ligase, chloroplastic/mitochondrial	73.953%	Swiss-Prot	strong database homology

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