LXL04_005895 | RubberDandelionOmics

Gene overview

LXL04_005895

Reference: OH-1004 Chr: Chr01 Coordinates: 175289725-175291751 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

729 bp · LXL04_005895|LXL04_005895|OH1004|cDNA

ATGGTACTGAAAGTTTATGCTGATCGAATATCCCAACCATCTCGTGCAATTCTCATTTTCTGCAAGATAAATgggataaattttgatgaaatcCGGGTAGATATCTTGAAAAACCAGCAATTCTCTCCTGAATATAAGGCAATAAATCCCATGCATCAAGTTCCAGCAATAACTGATGGACGGTTTAAGCTGTTTGAGAGTCATGCAATTCTTATCTATTTATCTTGTGCATTTCCGGGAGTTGCTAGTCATTGGTATCC...

CDS

Download CDS FASTA

729 bp · LXL04_005895|LXL04_005895|OH1004|CDS

ATGGTACTGAAAGTTTATGCTGATCGAATATCCCAACCATCTCGTGCAATTCTCATTTTCTGCAAGATAAATGGGATAAATTTTGATGAAATCCGGGTAGATATCTTGAAAAACCAGCAATTCTCTCCTGAATATAAGGCAATAAATCCCATGCATCAAGTTCCAGCAATAACTGATGGACGGTTTAAGCTGTTTGAGAGTCATGCAATTCTTATCTATTTATCTTGTGCATTTCCGGGAGTTGCTAGTCATTGGTATCC...

Protein

Download Protein FASTA

242 aa · LXL04_005895|LXL04_005895|OH1004|PROTEIN

MVLKVYADRISQPSRAILIFCKINGINFDEIRVDILKNQQFSPEYKAINPMHQVPAITDGRFKLFESHAILIYLSCAFPGVASHWYPGDLSKRAKIHSVLDWHHSNLRSGAAGFVFNAILAPLNGLPSSPQAGKEAEKILMKSLSKLETFWLKDGRFLVGSSQPSIADISLVCEIMQLQLLSEKECNRILSPYKKVLQWIEDTKKTTAPHFDEVHGVLFKAQKRIREQMTTKSGTNELKAKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005895`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005895

Location Chr01:175289725-175291751 (-)

Description Similar to GSTT1: Glutathione S-transferase T1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41210`	In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and p-nitrobenzyl chloride (pNBC), and glutathione peroxidase activity toward cumene hydroperoxide and linoleic acid-13-hydroperoxide.	Probing the diversity of the Arabidopsis glutathione S-transferase gene family.2002 · DOI: 10.1023/a:1015557300450
`UniProt: Q8L727`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At5g41220`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005895 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:1990830 cellular response to leukemia inhibitory factor Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009536 plastid Cellular Component

GO:0004364 glutathione transferase activity Molecular Function

GO:0004601 peroxidase activity Molecular Function

GO:0004602 glutathione peroxidase activity Molecular Function

KEGG gene cross-reference

ath:AT5G41210

ath:AT5G41220

ath:AT5G41240

mmu:14872

rno:29487

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.430

Rank 1 · LXL04_005895 · OH-1004

Cytoplasm0.264

Rank 2 · LXL04_005895 · OH-1004

Mitochondrion0.226

Rank 3 · LXL04_005895 · OH-1004

Nucleus0.076

Rank 4 · LXL04_005895 · OH-1004

Endoplasmic reticulum0.056

Rank 5 · LXL04_005895 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798.27GST_N1-74 aa

PF13417.13GST_N_36-80 aa

PF13409.13GST_N_214-74 aa

PF13410.12GST_C_2132-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005895	`PF02798.27`	GST_N	1	74	7.2e-12	46.2
LXL04_005895	`PF13417.13`	GST_N_3	6	80	7e-07	30.2
LXL04_005895	`PF13409.13`	GST_N_2	14	74	1.1e-07	33.0
LXL04_005895	`PF13410.12`	GST_C_2	132	201	8.8e-07	29.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZRT5`	Arabidopsis thaliana	Glutathione S-transferase T1	66.949%	Swiss-Prot	strong database homology
`Q8L727`	Arabidopsis thaliana	Glutathione S-transferase T2	66.949%	Swiss-Prot	strong database homology
`Q9FHE1`	Arabidopsis thaliana	Glutathione S-transferase T3	64.831%	Swiss-Prot	strong database homology

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