Gene Card
Gene overview
cDNA / CDS / Protein Sequences
984 bp · LXL04_005838|LXL04_005838|OH1004|cDNA
ATGGCTTCCAGATTAGGATTCACCATAACCAATTCTCGCTTCTCCACTGTTCCTCTTCCAAGACCCCCCTCGGTTTCTCGATCTTTACTCAATGCTTCCGCAAAAATTCAGTCGATTCAACTGATCGGAAGAGAAATTTTGAGTCAACGCCGGCTTTTAATAATCTCCCCTAAAGCCACCGGTGATCAACCAAGTGAAGTTAAAGAAGATAAAGTTATTGACAGCAACATTATGCCTTATTGCAGTATTAAACAAGAAAA...
984 bp · LXL04_005838|LXL04_005838|OH1004|CDS
ATGGCTTCCAGATTAGGATTCACCATAACCAATTCTCGCTTCTCCACTGTTCCTCTTCCAAGACCCCCCTCGGTTTCTCGATCTTTACTCAATGCTTCCGCAAAAATTCAGTCGATTCAACTGATCGGAAGAGAAATTTTGAGTCAACGCCGGCTTTTAATAATCTCCCCTAAAGCCACCGGTGATCAACCAAGTGAAGTTAAAGAAGATAAAGTTATTGACAGCAACATTATGCCTTATTGCAGTATTAAACAAGAAAA...
Protein
Download Protein FASTA327 aa · LXL04_005838|LXL04_005838|OH1004|PROTEIN
MASRLGFTITNSRFSTVPLPRPPSVSRSLLNASAKIQSIQLIGREILSQRRLLIISPKATGDQPSEVKEDKVIDSNIMPYCSIKQEKKSLGEMEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEAAMAYVSGTPIMSDAEYDKLKMQLKACKDGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLINVPAAVVAVGLFFFLDDITGFEITYLLEARILPEPFSFIFTWFAALPFILWLSFSF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005838 |
|---|---|
| TK1151 ID | TkA01G013660 |
| OH-1004 ID | LXL04_005838 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 91.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005838 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:174302481-174304193 (-) | |||||||||
| Description | Similar to PGRL1A: PGR5-like protein 1A, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009773 photosynthetic electron transport in photosystem I Biological Process GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009579 thylakoid Cellular Component GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors Molecular Function GO:0019904 protein domain specific binding Molecular Function GO:0042802 identical protein binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G11960 ath:AT4G22890 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF30905.1PGRL1_N91-167 aaPF30904.1PGRL1_C197-321 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005838 | PF30905.1 | PGRL1_N | 91 | 167 | 1.2e-34 | 119.2 |
| LXL04_005838 | PF30904.1 | PGRL1_C | 197 | 321 | 4.8e-52 | 175.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.