LXL04_005826 | RubberDandelionOmics

Gene overview

LXL04_005826

Reference: OH-1004 Chr: Chr01 Coordinates: 174208104-174210106 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1587 bp · LXL04_005826|LXL04_005826|OH1004|cDNA

ATGAAACAAAATTCCCGAAATTCCCTCGATAATCTACACAAAACCTCAACTGGCGCCACCGGAGTTACGACGGACATGAGGGTCATAGTACCCTTACAAGGTGTAGTTCAAGGCGGAGGCGGCTTGGTTCTAGGTTCAATCATCCCCTGCGCTCTCTTCTACTTCTTACAACTCTACCTAAAGGCCAAAAATCCCTCCGACGACGACCCCAACCCCTCGCCACCGCCCCAACTCCCGGAAActtctcctcctcctcctgg...

CDS

Download CDS FASTA

1587 bp · LXL04_005826|LXL04_005826|OH1004|CDS

ATGAAACAAAATTCCCGAAATTCCCTCGATAATCTACACAAAACCTCAACTGGCGCCACCGGAGTTACGACGGACATGAGGGTCATAGTACCCTTACAAGGTGTAGTTCAAGGCGGAGGCGGCTTGGTTCTAGGTTCAATCATCCCCTGCGCTCTCTTCTACTTCTTACAACTCTACCTAAAGGCCAAAAATCCCTCCGACGACGACCCCAACCCCTCGCCACCGCCCCAACTCCCGGAAACTTCTCCTCCTCCTCCTGG...

Protein

Download Protein FASTA

528 aa · LXL04_005826|LXL04_005826|OH1004|PROTEIN

MKQNSRNSLDNLHKTSTGATGVTTDMRVIVPLQGVVQGGGGLVLGSIIPCALFYFLQLYLKAKNPSDDDPNPSPPPQLPETSPPPPGSLQRVPSVRSIWSPRGTNGQVQVSSRANSVIKHPDSPYYVGLKRTSENPFDESSNPDGIIQLGLDENNLSLDLIQDWLATHTKCSIIGQELEMNGISTYHPFHGSSELKSAVAGFMSQVMEGHVSFNPSQIVLTAGTTPALEMLAFCLADPGNAFLVPSPYFPDLDRDIKWRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005826`
TK1151 ID	TkA01G014030
OH-1004 ID	LXL04_005826
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.900
Protein coverage (%)	TK1151 93.719 / OH-1004 70.644 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005826

Location Chr01:174208104-174210106 (-)

Description Similar to ACS12: Probable aminotransferase ACS12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51690`	Probable aminotransferase.	No verified direct reference in this release
`At1g62960`	Probable aminotransferase.	No verified direct reference in this release
`At4g37770`	1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0130400`	Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants (By similarity).	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm.2016 · DOI: 10.1104/pp.15.01811

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005826 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006520 amino acid metabolic process Biological Process

GO:0009693 ethylene biosynthetic process Biological Process

GO:0009835 fruit ripening Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0033097 amyloplast membrane Cellular Component

GO:0008483 transaminase activity Molecular Function

GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G62960

ath:AT4G37770

ath:AT5G51690

dosa:Os06g0130400

gmx:547976

osa:4340002

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.398

Rank 1 · LXL04_005826 · OH-1004

Mitochondrion0.171

Rank 2 · LXL04_005826 · OH-1004

Cytoplasm0.140

Rank 3 · LXL04_005826 · OH-1004

Endoplasmic reticulum0.114

Rank 4 · LXL04_005826 · OH-1004

Peroxisome0.101

Rank 5 · LXL04_005826 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155.28Aminotran_1_2147-524 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005826	`PF00155.28`	Aminotran_1_2	147	524	7.2e-71	240.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYY0`	Arabidopsis thaliana	Probable aminotransferase ACS12	54.348%	Swiss-Prot	strong database homology
`Q9LQ10`	Arabidopsis thaliana	Probable aminotransferase ACS10	54.545%	Swiss-Prot	strong database homology
`Q9T065`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate synthase 8	44.131%	Swiss-Prot	moderate database homology
`Q9SNN8`	Oryza sativa subsp. japonica	1-aminocyclopropane-1-carboxylate synthase 6	55.469%	Swiss-Prot	strong database homology

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