Gene Card
Gene overview
cDNA / CDS / Protein Sequences
939 bp · LXL04_005678|LXL04_005678|OH1004|cDNA
ATGGCCTTCCTCACTCATTTTCCCGTTGCTCCGATTCACCATCAGTCCTCTTCCCTCTTCACCAGATTCTTCCTTTCTCCCAAACCCAAAACCCTCTTAATATTCTCCTCACTTTCCCCACCTAACTTCTCTTCAACATCCACAATAATACCCTCTTCTTCTCTCGCAACTCTCGAAGAAATCTCACTTCCAGAAGAAACTCCCTTACAAATTGCCCGAGAAAAGCTTTTTATTCCTCCAGACACAGAAATATCGTCAGA...
939 bp · LXL04_005678|LXL04_005678|OH1004|CDS
ATGGCCTTCCTCACTCATTTTCCCGTTGCTCCGATTCACCATCAGTCCTCTTCCCTCTTCACCAGATTCTTCCTTTCTCCCAAACCCAAAACCCTCTTAATATTCTCCTCACTTTCCCCACCTAACTTCTCTTCAACATCCACAATAATACCCTCTTCTTCTCTCGCAACTCTCGAAGAAATCTCACTTCCAGAAGAAACTCCCTTACAAATTGCCCGAGAAAAGCTTTTTATTCCTCCAGACACAGAAATATCGTCAGA...
Protein
Download Protein FASTA312 aa · LXL04_005678|LXL04_005678|OH1004|PROTEIN
MAFLTHFPVAPIHHQSSSLFTRFFLSPKPKTLLIFSSLSPPNFSSTSTIIPSSSLATLEEISLPEETPLQIAREKLFIPPDTEISSEKPPRILKGSNIVVSKYARDAQIVSAEFVKSSVETEACPSDGSPEFALVGRSNVGKSSLLNSIVKRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYASWLGQNQVPMTLIFTKCDKRKKKKNGG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005678 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005678 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr01:170791833-170793175 (+) | ||||||
| Description | Similar to EMB2001: GTP-binding protein At2g22870 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0009507 chloroplast Cellular Component GO:0005525 GTP binding Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT2G22870 bfr:BF2048 bfs:BF9343_2016 bth:BT_1083 bvu:BVU_2968 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01926.30MMR_HSR1132-249 aaPF02421.25FeoB_N132-257 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005678 | PF01926.30 | MMR_HSR1 | 132 | 249 | 4.8e-19 | 69.3 |
| LXL04_005678 | PF02421.25 | FeoB_N | 132 | 257 | 2.7e-06 | 27.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
O81004 | Arabidopsis thaliana | GTP-binding protein At2g22870 | 53.846% | Swiss-Prot | strong database homology |