LXL04_005482 | RubberDandelionOmics

Gene overview

LXL04_005482

Reference: OH-1004 Chr: Chr01 Coordinates: 165129542-165133773 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

579 bp · LXL04_005482|LXL04_005482|OH1004|cDNA

ATGTCCGCCGGAGAAAACGGAGACCCCGACGGACGTATCAATGGAATCAAATCCGCACTCCGCGTCATCCCTAACTTTCCGAAACCAGGCATAATGTTTCAAGACATCACTACATTGTTGCTTGATCCGAAGGCATTTAAGGATACAATCGATTTGTTCGTTGAGCATTACAAACATGAAAGCATTTCTGTAATTGCAGGAATCGAGGCTCGCGGTTTTATATTCGGTCCTTCAATTGCACTTGCAATAGGAGCAAAGTT...

CDS

Download CDS FASTA

579 bp · LXL04_005482|LXL04_005482|OH1004|CDS

ATGTCCGCCGGAGAAAACGGAGACCCCGACGGACGTATCAATGGAATCAAATCCGCACTCCGCGTCATCCCTAACTTTCCGAAACCAGGCATAATGTTTCAAGACATCACTACATTGTTGCTTGATCCGAAGGCATTTAAGGATACAATCGATTTGTTCGTTGAGCATTACAAACATGAAAGCATTTCTGTAATTGCAGGAATCGAGGCTCGCGGTTTTATATTCGGTCCTTCAATTGCACTTGCAATAGGAGCAAAGTT...

Protein

Download Protein FASTA

192 aa · LXL04_005482|LXL04_005482|OH1004|PROTEIN

MSAGENGDPDGRINGIKSALRVIPNFPKPGIMFQDITTLLLDPKAFKDTIDLFVEHYKHESISVIAGIEARGFIFGPSIALAIGAKFVPLRKPKKLPGEVISEKYILEYGSDCLEMHVGAVKSGDRALVVDDLIATGGTICAAINLLERAGAEVVGCASVIEVPDLKGRERLKSHGKELYVLVESQFEPTTQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005482`
TK1151 ID	TkA01G043590
OH-1004 ID	LXL04_005482
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005482

Location Chr01:165129542-165133773 (-)

Description Similar to APT4: Adenine phosphoribosyltransferase 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12440`	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	No verified direct reference in this release
`At4g22570`	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	Adenine phosphoribosyltransferase isoforms of Arabidopsis and their potential contributions to adenine and cytokinin metabolism.2002 · DOI: 10.1034/j.1399-3054.2002.1150106.x
`At1g80050`	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	No verified direct reference in this release
`At1g27450`	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005482 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006166 purine ribonucleoside salvage Biological Process

GO:0006168 adenine salvage Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009690 cytokinin metabolic process Biological Process

GO:0044209 AMP salvage Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G27450

ath:AT1G80050

ath:AT4G12440

ath:AT4G22570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.661

Rank 1 · LXL04_005482 · OH-1004

Nucleus0.307

Rank 2 · LXL04_005482 · OH-1004

Plastid0.090

Rank 3 · LXL04_005482 · OH-1004

Mitochondrion0.066

Rank 4 · LXL04_005482 · OH-1004

Endoplasmic reticulum0.064

Rank 5 · LXL04_005482 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00156.34Pribosyltran42-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005482	`PF00156.34`	Pribosyltran	42	169	2.4e-18	66.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU38`	Arabidopsis thaliana	Adenine phosphoribosyltransferase 4	76.344%	Swiss-Prot	strong database homology
`Q9SUW2`	Arabidopsis thaliana	Adenine phosphoribosyltransferase 3	75.000%	Swiss-Prot	strong database homology
`Q42563`	Arabidopsis thaliana	Adenine phosphoribosyltransferase 2	68.912%	Swiss-Prot	strong database homology
`P31166`	Arabidopsis thaliana	Adenine phosphoribosyltransferase 1, chloroplastic	70.455%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card