LXL04_004704 | RubberDandelionOmics

Gene overview

LXL04_004704

Reference: OH-1004 Chr: Chr01 Coordinates: 144024827-144026223 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1005 bp · LXL04_004704|LXL04_004704|OH1004|cDNA

ATGGCAATTAGTAAATCAGTTGCAATAGTAGCCGCGATTGGTTTCATTTTTATGAACCTCAGTGGTCAATGCTATGGAGCTCTTCAGTTCGGGTTCTACAATGGAAAGTGTGGAACTTCAGATGTTGAAGACATTGTCCGAAAAACAGTCATCTCCAAGTTTCTTCTTGACAAAACAATAACTCCAGCTCTCCTTCGTTTACAGTTCCATGATTGCtttgttaatGGATGTGATGCGTCAATTTTACTCGATGGATCGAA...

CDS

Download CDS FASTA

1005 bp · LXL04_004704|LXL04_004704|OH1004|CDS

ATGGCAATTAGTAAATCAGTTGCAATAGTAGCCGCGATTGGTTTCATTTTTATGAACCTCAGTGGTCAATGCTATGGAGCTCTTCAGTTCGGGTTCTACAATGGAAAGTGTGGAACTTCAGATGTTGAAGACATTGTCCGAAAAACAGTCATCTCCAAGTTTCTTCTTGACAAAACAATAACTCCAGCTCTCCTTCGTTTACAGTTCCATGATTGCTTTGTTAATGGATGTGATGCGTCAATTTTACTCGATGGATCGAA...

Protein

Download Protein FASTA

334 aa · LXL04_004704|LXL04_004704|OH1004|PROTEIN

MAISKSVAIVAAIGFIFMNLSGQCYGALQFGFYNGKCGTSDVEDIVRKTVISKFLLDKTITPALLRLQFHDCFVNGCDASILLDGSNSEKTAPPNLSVRGYDVIDAAKTAVERACPRLVSCADIIVMGTRDAVSLSGGGRYNVQTGRKDGRVSLAQNAFSLPSPSTSVSSAIQAFARKNLTTTDMIYLLGGHTIGITHCSFFQDRLYNFKNTGRPDPTMNVTMLASLRRTCPQNARVDAPVNLDQNPMSSAVVDKSFYNQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004704`
TK1151 ID	TkA01G121250
OH-1004 ID	LXL04_004704
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.288 / OH-1004 83.533 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004704

Location Chr01:144024827-144026223 (+)

Description Similar to PER60: Peroxidase 60

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22410`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g26010`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g64120`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004704 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009808 lignin metabolic process Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0045730 respiratory burst Biological Process

GO:0048511 rhythmic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

KEGG gene cross-reference

ath:AT4G26010

ath:AT5G17820

ath:AT5G22410

ath:AT5G64120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.708

Rank 1 · LXL04_004704 · OH-1004

Cell membrane0.078

Rank 2 · LXL04_004704 · OH-1004

Cytoplasm0.055

Rank 3 · LXL04_004704 · OH-1004

Endoplasmic reticulum0.042

Rank 4 · LXL04_004704 · OH-1004

Lysosome / Vacuole0.037

Rank 5 · LXL04_004704 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase46-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004704	`PF00141.29`	peroxidase	46	288	1.2e-77	261.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMR0`	Arabidopsis thaliana	Peroxidase 60	52.147%	Swiss-Prot	strong database homology
`Q43729`	Arabidopsis thaliana	Peroxidase 57	49.007%	Swiss-Prot	moderate database homology
`Q93V93`	Arabidopsis thaliana	Peroxidase 44	45.963%	Swiss-Prot	moderate database homology
`Q43387`	Arabidopsis thaliana	Peroxidase 71	46.823%	Swiss-Prot	moderate database homology

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