LXL04_004327 | RubberDandelionOmics

Gene overview

LXL04_004327

Reference: OH-1004 Chr: Chr01 Coordinates: 132670302-132671969 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1581 bp · LXL04_004327|LXL04_004327|OH1004|cDNA

ATGTCACAACTTAACAACGAGGTATCATGGTGGTCGGAATTGATGGGCAGCAACAAAAACCAACTTACTCTAGCCCTTGCCACCATTTCAATATTGATATTTGCTGTTTTATGGCGCAAATGGAACTCCATAGATGGTGCACCCTCATTGCCACCAGGCCCATATTCCTTGCCAATTGTAGGCTATCTTCCATTTCTTGGTCGTGACTTACACACACAGTTCCGTGACATGGCTCACACTTACGGTTCCATTTTCAAGTT...

CDS

Download CDS FASTA

1581 bp · LXL04_004327|LXL04_004327|OH1004|CDS

ATGTCACAACTTAACAACGAGGTATCATGGTGGTCGGAATTGATGGGCAGCAACAAAAACCAACTTACTCTAGCCCTTGCCACCATTTCAATATTGATATTTGCTGTTTTATGGCGCAAATGGAACTCCATAGATGGTGCACCCTCATTGCCACCAGGCCCATATTCCTTGCCAATTGTAGGCTATCTTCCATTTCTTGGTCGTGACTTACACACACAGTTCCGTGACATGGCTCACACTTACGGTTCCATTTTCAAGTT...

Protein

Download Protein FASTA

526 aa · LXL04_004327|LXL04_004327|OH1004|PROTEIN

MSQLNNEVSWWSELMGSNKNQLTLALATISILIFAVLWRKWNSIDGAPSLPPGPYSLPIVGYLPFLGRDLHTQFRDMAHTYGSIFKFHLGSKLHVVINTADLAKVVVREQDDIFSNRNSSIAGLTLSYGGQDVVFSDNNSDWRNLRKIFVHEVLSKKNIEASRYFRSHEVRKTIKNVYSKIGTTIDISEIAFLTEANVLTSMVWENTSDPNSKGSNFGAELQKITSNIVELLGQPNLSDIFPTLAWLDLQGIVKNMKKQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004327`
TK1151 ID	TkA01G040610
OH-1004 ID	LXL04_004327
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	57.100
Protein coverage (%)	TK1151 97.087 / OH-1004 58.175 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004327

Location Chr01:132670302-132671969 (+)

Description Similar to CYP75A3: Flavonoid 3',5'-hydroxylase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45560`	Cytochrome P450 76C1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004327 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0016099 monoterpenoid biosynthetic process Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

KEGG gene cross-reference

ag:CAC80883

ath:AT2G45560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.915

Rank 1 · LXL04_004327 · OH-1004

Cytoplasm0.038

Rank 2 · LXL04_004327 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_004327 · OH-1004

Plastid0.031

Rank 4 · LXL04_004327 · OH-1004

Golgi apparatus0.027

Rank 5 · LXL04_004327 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45051-509 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004327	`PF00067.28`	p450	51	509	2.2e-102	344.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64636`	Arabidopsis thaliana	Cytochrome P450 76C1	37.732%	Swiss-Prot	moderate database homology

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