LXL04_004291 | RubberDandelionOmics

Gene overview

LXL04_004291

Reference: OH-1004 Chr: Chr01 Coordinates: 131795130-131796533 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1404 bp · LXL04_004291|LXL04_004291|OH1004|cDNA

ATGACAATACAACCGGCGGCCTTCGCCACCACAACCCTCCCCGTCTCCAATCCTTCAAAAACGACCACCGTCCACAAAAAACTCACTCTCATCCAACTCGTATTTCTCATATACTTTGAGGTTGCTGGTGGCCCTTATGGGGAAGAACCGGCGGTGAAGGCAGCCGGGCCATTCTTAGCCATTCTCGGATTTCTAATCTTCCCTTTTATATGGAGTATTCCAGAAGCTCTGGTCACCGCCGAACTCTCCACCACCTTTCC...

CDS

Download CDS FASTA

1404 bp · LXL04_004291|LXL04_004291|OH1004|CDS

ATGACAATACAACCGGCGGCCTTCGCCACCACAACCCTCCCCGTCTCCAATCCTTCAAAAACGACCACCGTCCACAAAAAACTCACTCTCATCCAACTCGTATTTCTCATATACTTTGAGGTTGCTGGTGGCCCTTATGGGGAAGAACCGGCGGTGAAGGCAGCCGGGCCATTCTTAGCCATTCTCGGATTTCTAATCTTCCCTTTTATATGGAGTATTCCAGAAGCTCTGGTCACCGCCGAACTCTCCACCACCTTTCC...

Protein

Download Protein FASTA

467 aa · LXL04_004291|LXL04_004291|OH1004|PROTEIN

MTIQPAAFATTTLPVSNPSKTTTVHKKLTLIQLVFLIYFEVAGGPYGEEPAVKAAGPFLAILGFLIFPFIWSIPEALVTAELSTTFPGNGGFIIWAHKAFGPFWGSLLGTLKYLTCVINMAAFPILCIDYLEKLFPIFASGLPRTLAILLLTILLTFVNLTGLDIVGYAAIILGVVSLFPFILMSVIAIPQIDPHRWLNMGQTGVKKDWNLLVNTLFWNLNFWDTVSTMAGEVENPKKTFPLALLFAVILTCFGYILPLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004291`
TK1151 ID	TkA01G174660
OH-1004 ID	LXL04_004291
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004291

Location Chr01:131795130-131796533 (-)

Description Similar to At3g13620: Probable polyamine transporter At3g13620

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13620`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At5g05630`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis.2012 · DOI: 10.1073/pnas.1121406109
`At1g31830`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At1g31820`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0700500`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Functional analysis of OsPUT1, a rice polyamine uptake transporter.2012 · DOI: 10.1007/s00425-011-1486-9

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004291 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0015839 cadaverine transport Biological Process

GO:0015846 polyamine transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015203 polyamine transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G31820

ath:AT1G31830

ath:AT3G13620

ath:AT5G05630

dosa:Os02g0700500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.607

Rank 1 · LXL04_004291 · OH-1004

Lysosome / Vacuole0.164

Rank 2 · LXL04_004291 · OH-1004

Cytoplasm0.128

Rank 3 · LXL04_004291 · OH-1004

Endoplasmic reticulum0.091

Rank 4 · LXL04_004291 · OH-1004

Golgi apparatus0.067

Rank 5 · LXL04_004291 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520.13AA_permease_228-419 aa

PF00324.28AA_permease51-429 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004291	`PF13520.13`	AA_permease_2	28	419	2.9e-36	126.0
LXL04_004291	`PF00324.28`	AA_permease	51	429	1e-18	68.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHN7`	Arabidopsis thaliana	Probable polyamine transporter At3g13620	68.387%	Swiss-Prot	strong database homology
`Q9FFL1`	Arabidopsis thaliana	Polyamine transporter RMV1	46.903%	Swiss-Prot	moderate database homology
`Q9C6S5`	Arabidopsis thaliana	Probable polyamine transporter At1g31830	45.516%	Swiss-Prot	moderate database homology
`Q9C6S4`	Arabidopsis thaliana	Probable polyamine transporter At1g31820	47.085%	Swiss-Prot	moderate database homology
`Q6Z8D0`	Oryza sativa subsp. japonica	Polyamine transporter PUT1	46.102%	Swiss-Prot	moderate database homology

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