LXL04_004171 | RubberDandelionOmics

Gene overview

LXL04_004171

Reference: OH-1004 Chr: Chr01 Coordinates: 127302658-127304505 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_004171|LXL04_004171|OH1004|cDNA

ATGGATAAAGATGGGAGGATACCACTGGGACAAAGACCGGAATGGTCCGACATCGCTCCGGTACCACAGGACGATGGCCCTAACCCCGTTGTCCCCATTGCGTACTCGGAAGAGTTCGCTGAGACTATGGACTACTTTCGAGCTGTATATCTGGCCGATGAGCGATCACTTCGTGCTCTTCGACTAACCACCGAAGCAATCCACTTGAATGCCGGAAATTACACCGTATGGCAATTCAGAAGAGTAATACTCGAGTCTCT...

CDS

Download CDS FASTA

1017 bp · LXL04_004171|LXL04_004171|OH1004|CDS

ATGGATAAAGATGGGAGGATACCACTGGGACAAAGACCGGAATGGTCCGACATCGCTCCGGTACCACAGGACGATGGCCCTAACCCCGTTGTCCCCATTGCGTACTCGGAAGAGTTCGCTGAGACTATGGACTACTTTCGAGCTGTATATCTGGCCGATGAGCGATCACTTCGTGCTCTTCGACTAACCACCGAAGCAATCCACTTGAATGCCGGAAATTACACCGTATGGCAATTCAGAAGAGTAATACTCGAGTCTCT...

Protein

Download Protein FASTA

338 aa · LXL04_004171|LXL04_004171|OH1004|PROTEIN

MDKDGRIPLGQRPEWSDIAPVPQDDGPNPVVPIAYSEEFAETMDYFRAVYLADERSLRALRLTTEAIHLNAGNYTVWQFRRVILESLNADLQGELEFVEHLASKNSKNYQLWHHRRWVAEKLGSESASRELEFTKNIFLNDAKNYHAWSHRQWVLQNLGGWEDELAYCDKLLEDDIFNNSAWNQRYFVITRHPGLGGIEGTRDSEVNYTIKSITKKPENESPWRYLRGLFKNNMESITKDPRVTSLCFKVLTSKVNCVFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004171`
TK1151 ID	TkA01G191830
OH-1004 ID	LXL04_004171
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.600
Protein coverage (%)	TK1151 82.775 / OH-1004 51.183 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004171

Location Chr01:127302658-127304505 (+)

Description Similar to FTA: Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59380`	Essential subunit of both the farnesyltransferase and the geranylgeranyltransferase complex.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004171 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007323 peptide pheromone maturation Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0018342 protein prenylation Biological Process

GO:0018343 protein farnesylation Biological Process

GO:0018344 protein geranylgeranylation Biological Process

GO:0035022 positive regulation of Rac protein signal transduction Biological Process

GO:0048509 regulation of meristem development Biological Process

GO:0060632 regulation of microtubule-based movement Biological Process

GO:0071340 skeletal muscle acetylcholine-gated channel clustering Biological Process

GO:0080120 CAAX-box protein maturation Biological Process

KEGG gene cross-reference

ath:AT3G59380

bta:281169

hsa:2339

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.744

Rank 1 · LXL04_004171 · OH-1004

Nucleus0.470

Rank 2 · LXL04_004171 · OH-1004

Mitochondrion0.062

Rank 3 · LXL04_004171 · OH-1004

Peroxisome0.060

Rank 4 · LXL04_004171 · OH-1004

Plastid0.036

Rank 5 · LXL04_004171 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01239.29PPTA58-86 aa

PF01239.29PPTA92-121 aa

PF01239.29PPTA129-158 aa

PF01239.29PPTA161-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004171	`PF01239.29`	PPTA	58	86	4.6e-42	139.7
LXL04_004171	`PF01239.29`	PPTA	92	121	4.6e-42	139.7
LXL04_004171	`PF01239.29`	PPTA	129	158	4.6e-42	139.7
LXL04_004171	`PF01239.29`	PPTA	161	191	4.6e-42	139.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX33`	Arabidopsis thaliana	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	61.162%	Swiss-Prot	strong database homology

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