LXL04_003991 | RubberDandelionOmics

Gene overview

LXL04_003991

Reference: OH-1004 Chr: Chr01 Coordinates: 121014337-121017581 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2697 bp · LXL04_003991|LXL04_003991|OH1004|cDNA

ATGCCACATCAACATTCGGGTGCTTCAGTCATTCGACATGTAGAGAATGTTGATGTTGATGTATACTCTTGTATACGCAACGTATCTGTTCAAACAGGTGAAGAGTTTTCCCCAGAGTTTCTTCGGGCCCACCAACCTAAACTAGATGTACAAACATCCGAAGAATCTTTCCGCGAATTTCAACAAGATTGTAGTAATTCACCAATAGTAAACATCTCAGATAATCGCCAACATAGAAGAGTTGGATTTCAATGCAATCA...

CDS

Download CDS FASTA

2697 bp · LXL04_003991|LXL04_003991|OH1004|CDS

ATGCCACATCAACATTCGGGTGCTTCAGTCATTCGACATGTAGAGAATGTTGATGTTGATGTATACTCTTGTATACGCAACGTATCTGTTCAAACAGGTGAAGAGTTTTCCCCAGAGTTTCTTCGGGCCCACCAACCTAAACTAGATGTACAAACATCCGAAGAATCTTTCCGCGAATTTCAACAAGATTGTAGTAATTCACCAATAGTAAACATCTCAGATAATCGCCAACATAGAAGAGTTGGATTTCAATGCAATCA...

Protein

Download Protein FASTA

898 aa · LXL04_003991|LXL04_003991|OH1004|PROTEIN

MPHQHSGASVIRHVENVDVDVYSCIRNVSVQTGEEFSPEFLRAHQPKLDVQTSEESFREFQQDCSNSPIVNISDNRQHRRVGFQCNQNQQFVYEEASSSGILKRDSEYGTDISKGFPLMEVETNPYTDVNRYQNKDHTIYNTQICYTHNAVPQAYPLYSHVSGVPDFSFPGKLKFLCSFGGKILPRPSDGKLRYVGGETRIISILKSLNYQELLEKTCSIWNQPHMIKYQLPDEDLDALISVCSDEDFRHMIEEYHELEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003991`
TK1151 ID	TkA01G216960
OH-1004 ID	LXL04_003991
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_003991

Location Chr01:121014337-121017581 (-)

Description Similar to EDR1: Serine/threonine-protein kinase EDR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79570`	RAF-like protein kinase acting, together with RAF24, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At2g35050`	RAF-like protein kinase acting, together with RAF20, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At1g08720`	MAPKKK serine/threonine-protein kinase involved in the regulation of a MAP kinase cascade (probably including MPK3 and MPK6) that negatively regulates salicylic acid- (SA-) dependent defense responses, abscisic acid (ABA) signaling, and ethylene-induced senescence.	Negative regulation of defense responses in plants by a conserved MAPKK kinase.2001 · DOI: 10.1073/pnas.98.1.373 Overexpression of a kinase-deficient form of the EDR1 gene enhances powdery mildew resistance and ethylene-induced senescence in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01482.x Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase.2005 · DOI: 10.1104/pp.105.060400 Costs and benefits of priming for defense in Arabidopsis.2006 · DOI: 10.1073/pnas.0510213103 Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling.2008 · DOI: 10.1104/pp.108.127605 Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.062158 The KEEP ON GOING protein of Arabidopsis recruits the ENHANCED DISEASE RESISTANCE1 protein to trans-Golgi network/early endosome vesicles.2011 · DOI: 10.1104/pp.110.171785 Arabidopsis ENHANCED DISEASE RESISTANCE 1 is required for pathogen-induced expression of plant defensins in nonhost resistance, and acts through interference of MYC2-mediated repressor function.2011 · DOI: 10.1111/j.1365-313x.2011.04651.x Negative regulation of defence signalling pathways by the EDR1 protein kinase.2011 · DOI: 10.1111/j.1364-3703.2011.00708.x An Arabidopsis mutant with enhanced resistance to powdery mildew.1998 · DOI: 10.1105/tpc.10.6.947

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003991 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010109 regulation of photosynthesis Biological Process

GO:0010114 response to red light Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G79570

ath:AT2G35050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.542

Rank 1 · LXL04_003991 · OH-1004

Nucleus0.329

Rank 2 · LXL04_003991 · OH-1004

Cell membrane0.316

Rank 3 · LXL04_003991 · OH-1004

Golgi apparatus0.045

Rank 4 · LXL04_003991 · OH-1004

Endoplasmic reticulum0.038

Rank 5 · LXL04_003991 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00564.31PB1189-270 aa

PF00069.32Pkinase613-873 aa

PF07714.24PK_Tyr_Ser-Thr614-875 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003991	`PF00564.31`	PB1	189	270	3.8e-17	62.7
LXL04_003991	`PF00069.32`	Pkinase	613	873	1.7e-46	159.5
LXL04_003991	`PF07714.24`	PK_Tyr_Ser-Thr	614	875	1.6e-61	208.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SAJ2`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 20	70.323%	Swiss-Prot	weak database homology
`O64768`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 24	68.106%	Swiss-Prot	weak database homology
`Q9FPR3`	Arabidopsis thaliana	Serine/threonine-protein kinase EDR1	38.828%	Swiss-Prot	weak database homology

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