LXL04_003181 | RubberDandelionOmics

Gene overview

LXL04_003181

Reference: OH-1004 Chr: Chr01 Coordinates: 70368002-70371154 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · LXL04_003181|LXL04_003181|OH1004|cDNA

ATGCCATTTCTAACCATCCAAATAGTGGCTATAACTGCAACCATATCCAGTTGGATCCTAGAACTCGATAAATATTTCACAAGTTGTCGGCCTACAAGTTGTGTTAAGCAGCTGAATATCGTAGATATGTCCTGCATCAGTAGCATGACCATTGATGAAGAGAAGATCAGCAAGACAGCATTGCTTCTTTTCAGTCGGCCATGGATTTGCTATTGGATCCTACATTCACTTGCTGTATTAGGAGAGTCTGTTGATGAGAA...

CDS

Download CDS FASTA

768 bp · LXL04_003181|LXL04_003181|OH1004|CDS

ATGCCATTTCTAACCATCCAAATAGTGGCTATAACTGCAACCATATCCAGTTGGATCCTAGAACTCGATAAATATTTCACAAGTTGTCGGCCTACAAGTTGTGTTAAGCAGCTGAATATCGTAGATATGTCCTGCATCAGTAGCATGACCATTGATGAAGAGAAGATCAGCAAGACAGCATTGCTTCTTTTCAGTCGGCCATGGATTTGCTATTGGATCCTACATTCACTTGCTGTATTAGGAGAGTCTGTTGATGAGAA...

Protein

Download Protein FASTA

255 aa · LXL04_003181|LXL04_003181|OH1004|PROTEIN

MPFLTIQIVAITATISSWILELDKYFTSCRPTSCVKQLNIVDMSCISSMTIDEEKISKTALLLFSRPWICYWILHSLAVLGESVDENLENNAIAFISRCQDQHGGYGGGPGQMPHLATTYVAGNSLITLGGHKSLSSINRCCQIMGRSEQDDFTAAQICWKFGPQCSHLYGNRIFSIRKENRSSLLSAIQMKSLHLLLLSFSALQPRAAPPFPTPTLKPADTSKRALGSDTNCWKFGPQCSHLYGNRIFSIRIEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003181`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003181

Location Chr01:70368002-70371154 (-)

Description Similar to FTB: Protein farnesyltransferase subunit beta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40280`	Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic- aliphatic-X (CaaX).	The CaaX specificities of Arabidopsis protein prenyltransferases explain era1 and ggb phenotypes.2010 · DOI: 10.1186/1471-2229-10-118 ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis.2016 · DOI: 10.1111/pce.12605

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003181 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009620 response to fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0018342 protein prenylation Biological Process

GO:0018343 protein farnesylation Biological Process

GO:0045787 positive regulation of cell cycle Biological Process

GO:0047484 regulation of response to osmotic stress Biological Process

KEGG gene cross-reference

ath:AT5G40280

bta:327686

mgr:MGG_01287

mmu:110606

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.432

Rank 1 · LXL04_003181 · OH-1004

Mitochondrion0.264

Rank 2 · LXL04_003181 · OH-1004

Nucleus0.258

Rank 3 · LXL04_003181 · OH-1004

Peroxisome0.087

Rank 4 · LXL04_003181 · OH-1004

Cell membrane0.073

Rank 5 · LXL04_003181 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00432.28Prenyltrans63-147 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003181	`PF00432.28`	Prenyltrans	63	147	9.4e-19	68.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38920`	Arabidopsis thaliana	Protein farnesyltransferase subunit beta	72.368%	Swiss-Prot	weak database homology

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