LXL04_001358 | RubberDandelionOmics

Gene overview

LXL04_001358

Reference: OH-1004 Chr: Chr01 Coordinates: 24747326-24748683 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · LXL04_001358|LXL04_001358|OH1004|cDNA

ATGGAGATGAAATTGGTGGCAGAGGCGGCGGACCAGACGGTGTATGAGGGTGAAGGGGGAGGTTACTATTCCTGGTCAACTTCCAAATCTCCATTGTTGCAGGATTTAAAGCTTGGTGCCGGCAAGCTTCTCCTCCACCCTCATGGATTCGCTCTTCCTCACTATGCCGATTCCTCCAAAATCGGTTATGTTCTTGAAGGTGTGTGCACGGTTGGATTGGTGGCGCCGAACAGTTCCCAAGAAACCGTCGTAGTGATCAA...

CDS

Download CDS FASTA

1146 bp · LXL04_001358|LXL04_001358|OH1004|CDS

ATGGAGATGAAATTGGTGGCAGAGGCGGCGGACCAGACGGTGTATGAGGGTGAAGGGGGAGGTTACTATTCCTGGTCAACTTCCAAATCTCCATTGTTGCAGGATTTAAAGCTTGGTGCCGGCAAGCTTCTCCTCCACCCTCATGGATTCGCTCTTCCTCACTATGCCGATTCCTCCAAAATCGGTTATGTTCTTGAAGGTGTGTGCACGGTTGGATTGGTGGCGCCGAACAGTTCCCAAGAAACCGTCGTAGTGATCAA...

Protein

Download Protein FASTA

381 aa · LXL04_001358|LXL04_001358|OH1004|PROTEIN

MEMKLVAEAADQTVYEGEGGGYYSWSTSKSPLLQDLKLGAGKLLLHPHGFALPHYADSSKIGYVLEGVCTVGLVAPNSSQETVVVIKKGDVIPLQRGVVSWWFNGGETDLTIVFIGETTIAQIPGQFTYYFMAGVLGILRGFQSDVVAKVFGLTNQESEDIATSQPGVVIVKLGDGIVFPNASKYVKEKLYATIDTPKADVVVKGGGTINSLTGKDFPMVVEMGLSARFVRLECEAILAPSYVADGSIQVIYVAKGSGRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001358`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001358

Location Chr01:24747326-24748683 (-)

Description Similar to GLUD1: Glutelin type-D 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03890`	Seed storage protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0249000`	Seed storage protein.	Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm.2008 · DOI: 10.1093/jxb/ern265
`Os10g0400200`	Seed storage protein.	No verified direct reference in this release
`Os01g0762500`	Seed storage protein.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001358 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010431 seed maturation Biological Process

GO:0048316 seed development Biological Process

GO:0000326 protein storage vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0043245 extraorganismal space Cellular Component

GO:0045735 nutrient reservoir activity Molecular Function

KEGG gene cross-reference

ath:AT1G03890

dosa:Os02g0249000

dosa:Os10g0400200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.279

Rank 1 · LXL04_001358 · OH-1004

Cytoplasm0.215

Rank 2 · LXL04_001358 · OH-1004

Lysosome / Vacuole0.209

Rank 3 · LXL04_001358 · OH-1004

Endoplasmic reticulum0.174

Rank 4 · LXL04_001358 · OH-1004

Nucleus0.072

Rank 5 · LXL04_001358 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00190.29Cupin_112-157 aa

PF00190.29Cupin_1195-308 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001358	`PF00190.29`	Cupin_1	12	157	3.4e-36	124.8
LXL04_001358	`PF00190.29`	Cupin_1	195	308	3.4e-36	124.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZWA9`	Arabidopsis thaliana	12S seed storage protein CRD	23.032%	Swiss-Prot	weak database homology
`Q6K508`	Oryza sativa subsp. japonica	Glutelin type-D 1	21.471%	Swiss-Prot	weak database homology
`P07730`	Oryza sativa subsp. japonica	Glutelin type-A 2	20.882%	Swiss-Prot	weak database homology
`P07728`	Oryza sativa subsp. japonica	Glutelin type-A 1	20.588%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card