LXL04_001033 | RubberDandelionOmics

Gene overview

LXL04_001033

Reference: OH-1004 Chr: Chr01 Coordinates: 18892537-18894150 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

685 bp · LXL04_001033|LXL04_001033|OH1004|cDNA

ataaatccCATCTTAATCCTTGTCCTTGTCAATTGTCATGGACACTTGTACAACTTTGCTCATTACATTACTAACCATTACAGTTATTACAGTTAAATGTCAAATCACTACACCTTGCACTTTGTCCATGATCACGGGCTTTACTCCGTGTGTAAATTATTTAACTGGAAGCACTGCAAATGGGAAATCACCAAGCGTGAGTTGTTGTGATGCAATGGAGTCACTAATGACAACAAGTATGGATTGTACCTGTCTTTTAG...

CDS

Download CDS FASTA

666 bp · LXL04_001033|LXL04_001033|OH1004|CDS

TTGTCCTTGTCAATTGTCATGGACACTTGTACAACTTTGCTCATTACATTACTAACCATTACAGTTATTACAGTTAAATGTCAAATCACTACACCTTGCACTTTGTCCATGATCACGGGCTTTACTCCGTGTGTAAATTATTTAACTGGAAGCACTGCAAATGGGAAATCACCAAGCGTGAGTTGTTGTGATGCAATGGAGTCACTAATGACAACAAGTATGGATTGTACCTGTCTTTTAGTTACGGGAAATGTTCCCTT...

Protein

Download Protein FASTA

221 aa · LXL04_001033|LXL04_001033|OH1004|PROTEIN

MSLSIVMDTCTTLLITLLTITVITVKCQITTPCTLSMITGFTPCVNYLTGSTANGKSPSVSCCDAMESLMTTSMDCTCLLVTGNVPFSLPNPINQALAISLPQACNSESMALQCKASGVSLPPPGPMLFAPPPPKAFPPIADSPEFSPSPSVLEMIAITPTHSETTTMVSFNTQEASAPLTRSTPRATSEILPLVNEALALNRLSISSTFIVLLILANYCF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001033`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001033

Location Chr01:18892537-18894150 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g48140`	Essential protein involved in female gametophyte development.	No verified direct reference in this release
`At1g05450`	Probable lipid transfer protein.	No verified direct reference in this release
`At3g22620`	Probable lipid transfer protein.	No verified direct reference in this release
`At3g22600`	Lipid transfer protein involved in seed and ovule maturation and development, probably by regulating the fatty acids homeostasis during suberin and sporopollenin biosynthesis or deposition.	Involvement of lipid transfer proteins in resistance against a non-host powdery mildew in Arabidopsis thaliana.2019 · DOI: 10.1111/mpp.12740
`At2g48130`	Probable lipid transfer protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001033 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002240 response to molecule of oomycetes origin Biological Process

GO:0006869 lipid transport Biological Process

GO:0009561 megagametogenesis Biological Process

GO:0009624 response to nematode Biological Process

GO:0009845 seed germination Biological Process

GO:0010214 seed coat development Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G05450

ath:AT2G48130

ath:AT2G48140

ath:AT3G22600

ath:AT3G22620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.703

Rank 1 · LXL04_001033 · OH-1004

Endoplasmic reticulum0.133

Rank 2 · LXL04_001033 · OH-1004

Extracellular0.086

Rank 3 · LXL04_001033 · OH-1004

Cytoplasm0.085

Rank 4 · LXL04_001033 · OH-1004

Nucleus0.060

Rank 5 · LXL04_001033 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368.12LTP_222-114 aa

PF00234.28Tryp_alpha_amyl40-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001033	`PF14368.12`	LTP_2	22	114	6.6e-15	55.8
LXL04_001033	`PF00234.28`	Tryp_alpha_amyl	40	109	6.5e-06	27.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AX3`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 16	36.842%	Swiss-Prot	moderate database homology
`Q1G2Y5`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 21	49.074%	Swiss-Prot	weak database homology
`Q9LJ85`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 20	40.708%	Swiss-Prot	moderate database homology
`Q9LJ86`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 5	30.928%	Swiss-Prot	weak database homology
`Q7EB72`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 15	35.345%	Swiss-Prot	moderate database homology

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