LXL04_000804 | RubberDandelionOmics

Gene overview

LXL04_000804

Reference: OH-1004 Chr: Chr01 Coordinates: 14864024-14865737 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1170 bp · LXL04_000804|LXL04_000804|OH1004|cDNA

ATGGAATATCCTCTCACTTCCTCTTTCAACGTCAACAACCGACTGGTAATCGTTTCCTACTCGTTACCATCTGCGGCGTATAATCATCGTCGTTTGAATGGAACTTCACACCATCGGTTCGCCTTTTCCGGGTTGTCAGTGGAGAAGCGGTGTCGTTCGGTGAGTTTGGTGGCTTGCGCGAGTAATTATGGCGGTTTTAGTAGCGGAGGTAGTAGTTACTGTGAGTTTAGTAGTTTAAATACGCCGATTGAGCCGGCGAC...

CDS

Download CDS FASTA

1170 bp · LXL04_000804|LXL04_000804|OH1004|CDS

ATGGAATATCCTCTCACTTCCTCTTTCAACGTCAACAACCGACTGGTAATCGTTTCCTACTCGTTACCATCTGCGGCGTATAATCATCGTCGTTTGAATGGAACTTCACACCATCGGTTCGCCTTTTCCGGGTTGTCAGTGGAGAAGCGGTGTCGTTCGGTGAGTTTGGTGGCTTGCGCGAGTAATTATGGCGGTTTTAGTAGCGGAGGTAGTAGTTACTGTGAGTTTAGTAGTTTAAATACGCCGATTGAGCCGGCGAC...

Protein

Download Protein FASTA

389 aa · LXL04_000804|LXL04_000804|OH1004|PROTEIN

MEYPLTSSFNVNNRLVIVSYSLPSAAYNHRRLNGTSHHRFAFSGLSVEKRCRSVSLVACASNYGGFSSGGSSYCEFSSLNTPIEPATPAGRFLSSVFLNERKSFHDAVADTLEKLVADLNEAYARRSLTADSSEALLHRRIADLKKLDCRTAVEDVMYMLILYKFSEVKVYLIPKLSMCIYNGRLEILPSKDWELESIHSSEILEMIRAHLTSVIGWKPDFSVTDNWATTKIKRLNLRQIYTSSIHFGYFLKSATLRHQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000804`
TK1151 ID	TkA01G586550
OH-1004 ID	LXL04_000804
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000804

Location Chr01:14864024-14865737 (+)

Description Similar to At3g17800: UV-B-induced protein At3g17800, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17800`	UV-B-induced protein At3g17800, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000804 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0010193 response to ozone Biological Process

GO:0010224 response to UV-B Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT3G17800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.888

Rank 1 · LXL04_000804 · OH-1004

Nucleus0.082

Rank 2 · LXL04_000804 · OH-1004

Mitochondrion0.075

Rank 3 · LXL04_000804 · OH-1004

Cytoplasm0.043

Rank 4 · LXL04_000804 · OH-1004

Cell membrane0.020

Rank 5 · LXL04_000804 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05542.17DUF760137-262 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000804	`PF05542.17`	DUF760	137	262	1.9e-19	70.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVJ0`	Arabidopsis thaliana	UV-B-induced protein At3g17800, chloroplastic	30.838%	Swiss-Prot	moderate database homology

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