LXL04_000730 | RubberDandelionOmics

Gene overview

LXL04_000730

Reference: OH-1004 Chr: Chr01 Coordinates: 13432881-13443222 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2751 bp · LXL04_000730|LXL04_000730|OH1004|cDNA

ATGTCTTATTCTCGGGTAAACCTTACAAATTATCTTATTCCACTGTATGAGATCATCAGTGCCACCGAAAACTTCAGTCAGGAAAGATGTATCGGAGGCGGTGGATTTGGTTTAGTCTACAGAGGGCAACTCTCTGAAAGCTGGAAAAGCCAATCAGTTGCTGTCAAACGGCTAGCTGCAGACAGCCATCAAGGAGAGCATGAGTTCCGCAACGAGCTTGACATTATTTCCAGTTTCCAGCATGAAAACATCATCGCTTT...

CDS

Download CDS FASTA

2751 bp · LXL04_000730|LXL04_000730|OH1004|CDS

ATGTCTTATTCTCGGGTAAACCTTACAAATTATCTTATTCCACTGTATGAGATCATCAGTGCCACCGAAAACTTCAGTCAGGAAAGATGTATCGGAGGCGGTGGATTTGGTTTAGTCTACAGAGGGCAACTCTCTGAAAGCTGGAAAAGCCAATCAGTTGCTGTCAAACGGCTAGCTGCAGACAGCCATCAAGGAGAGCATGAGTTCCGCAACGAGCTTGACATTATTTCCAGTTTCCAGCATGAAAACATCATCGCTTT...

Protein

Download Protein FASTA

916 aa · LXL04_000730|LXL04_000730|OH1004|PROTEIN

MSYSRVNLTNYLIPLYEIISATENFSQERCIGGGGFGLVYRGQLSESWKSQSVAVKRLAADSHQGEHEFRNELDIISSFQHENIIAFIGYCDEGDEMIIVYEYALNGSLNYHLEHRDKISRITWAQRLEICIGAARGLHYLHSGLGEKNKVIHRDIKSANILLDDNMVAKISDFGLSKLHTRNQLDTRFNTKVAGSRYYLDPTYGESGILQKESDIYSFGVVLFEIMSGMLVYRERRTGNEPQLLMNMVRRMERDNIIDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000730`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000730

Location Chr01:13432881-13443222 (+)

Description Similar to PUB13: U-box domain-containing protein 13

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46510`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At2g28830`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000730 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050777 negative regulation of immune response Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G46290

ath:AT3G46510

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.454

Rank 1 · LXL04_000730 · OH-1004

Cell membrane0.333

Rank 2 · LXL04_000730 · OH-1004

Nucleus0.294

Rank 3 · LXL04_000730 · OH-1004

Endoplasmic reticulum0.058

Rank 4 · LXL04_000730 · OH-1004

Mitochondrion0.048

Rank 5 · LXL04_000730 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase26-297 aa

PF07714.24PK_Tyr_Ser-Thr27-299 aa

PF25598.2ARM_PUB321-579 aa

PF24768.2ARM_ARMC5321-497 aa

PF00514.30Arm351-390 aa

PF24768.2ARM_ARMC5467-569 aa

PF24768.2ARM_ARMC5707-803 aa

PF25598.2ARM_PUB715-877 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000730	`PF00069.32`	Pkinase	26	297	7.4e-44	150.8
LXL04_000730	`PF07714.24`	PK_Tyr_Ser-Thr	27	299	5.2e-46	157.8
LXL04_000730	`PF25598.2`	ARM_PUB	321	579	1.2e-37	130.7
LXL04_000730	`PF24768.2`	ARM_ARMC5	321	497	1.1e-25	91.3
LXL04_000730	`PF00514.30`	Arm	351	390	7.5e-33	112.2
LXL04_000730	`PF24768.2`	ARM_ARMC5	467	569	1.1e-25	91.3
LXL04_000730	`PF24768.2`	ARM_ARMC5	707	803	1.1e-25	91.3
LXL04_000730	`PF25598.2`	ARM_PUB	715	877	1.2e-37	130.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SNC6`	Arabidopsis thaliana	U-box domain-containing protein 13	51.064%	Swiss-Prot	weak database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	45.482%	Swiss-Prot	weak database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	44.880%	Swiss-Prot	weak database homology
`Q9ZV31`	Arabidopsis thaliana	U-box domain-containing protein 12	50.368%	Swiss-Prot	weak database homology
`O80623`	Arabidopsis thaliana	Probable receptor-like protein kinase At2g39360	45.333%	Swiss-Prot	weak database homology

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