LXL04_000694 | RubberDandelionOmics

Gene overview

LXL04_000694

Reference: OH-1004 Chr: Chr01 Coordinates: 12774231-12793845 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5946 bp · LXL04_000694|LXL04_000694|OH1004|cDNA

ATGGAGATGTGTTTATGGCCATGGAAGCTTCTATGTGATGATTCTTGGTGCAGAACTACGGACATAATCAGTAAATTTGAAGTGGAATTGAAGTTGGTGTggttggctaaaactcctcagattgccattggtaagcgacaaacggagTATGTTCACGCTGTCTTGGGTTCCATTCCTGCGTCCCCCCCACCGGCTGGAATGCAGGCTCAGTGTATCCCCAACAGCTGCGAAGACCTCGAGACGAATTCTATCAATGTCAT...

CDS

Download CDS FASTA

5946 bp · LXL04_000694|LXL04_000694|OH1004|CDS

ATGGAGATGTGTTTATGGCCATGGAAGCTTCTATGTGATGATTCTTGGTGCAGAACTACGGACATAATCAGTAAATTTGAAGTGGAATTGAAGTTGGTGTGGTTGGCTAAAACTCCTCAGATTGCCATTGGTAAGCGACAAACGGAGTATGTTCACGCTGTCTTGGGTTCCATTCCTGCGTCCCCCCCACCGGCTGGAATGCAGGCTCAGTGTATCCCCAACAGCTGCGAAGACCTCGAGACGAATTCTATCAATGTCAT...

Protein

Download Protein FASTA

1981 aa · LXL04_000694|LXL04_000694|OH1004|PROTEIN

MEMCLWPWKLLCDDSWCRTTDIISKFEVELKLVWLAKTPQIAIGKRQTEYVHAVLGSIPASPPPAGMQAQCIPNSCEDLETNSINVIPNPESIEKLHRSLLGEARCLKTLNNILELLMVEGLNDVKLSYYGGLTVLLEFSSRIAAKDYLFLAKGTWSKWFRELDCWSPELQPMKHFASLSIVGVPPHAWFSDVFSDIGTMRGDVVIPEWCNEVTWNRERGKVVILTQSFNIINETVEIIINNSRFKIMVIEDFKESERIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000694`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000694

Location Chr01:12774231-12793845 (-)

Description Similar to LBD13: LOB domain-containing protein 13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30340`	LOB domain-containing protein 13.	No verified direct reference in this release
`At2g40470`	LOB domain-containing protein 15.	No verified direct reference in this release
`At2g30130`	LOB domain-containing protein 12.	No verified direct reference in this release
`At3g27650`	LOB domain-containing protein 25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000694 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010016 shoot system morphogenesis Biological Process

GO:0010311 lateral root formation Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1905177 tracheary element differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003824 catalytic activity Molecular Function

KEGG gene cross-reference

ath:AT2G30130

ath:AT2G30340

ath:AT2G40470

ath:AT3G27650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469

Rank 1 · LXL04_000694 · OH-1004

Nucleus0.452

Rank 2 · LXL04_000694 · OH-1004

Cell membrane0.113

Rank 3 · LXL04_000694 · OH-1004

Endoplasmic reticulum0.040

Rank 4 · LXL04_000694 · OH-1004

Plastid0.036

Rank 5 · LXL04_000694 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03372.30Exo_endo_phos677-797 aa

PF14529.13Exo_endo_phos_2678-800 aa

PF00078.33RVT_11076-1333 aa

PF13966.12zf-RVT1531-1589 aa

PF03195.20LOB1695-1792 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000694	`PF03372.30`	Exo_endo_phos	677	797	2.8e-07	31.2
LXL04_000694	`PF14529.13`	Exo_endo_phos_2	678	800	2.8e-08	34.4
LXL04_000694	`PF00078.33`	RVT_1	1076	1333	2.2e-28	100.2
LXL04_000694	`PF13966.12`	zf-RVT	1531	1589	9.4e-09	36.5
LXL04_000694	`PF03195.20`	LOB	1695	1792	1.9e-38	131.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9AT61`	Arabidopsis thaliana	LOB domain-containing protein 13	71.250%	Swiss-Prot	weak database homology
`Q8L5T5`	Arabidopsis thaliana	LOB domain-containing protein 15	74.684%	Swiss-Prot	weak database homology
`Q8LBW3`	Arabidopsis thaliana	LOB domain-containing protein 12	64.865%	Swiss-Prot	weak database homology
`Q8L8Q3`	Arabidopsis thaliana	LOB domain-containing protein 25	61.682%	Swiss-Prot	weak database homology

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