Gene Card
Gene overview
cDNA / CDS / Protein Sequences
492 bp · LXL04_000687|LXL04_000687|OH1004|cDNA
ATGAATATGAACCCTAGAAATTGGCTCAACTTGCATAAGCTGGGAGTGGTTGTGAAGCTGATGGAGAAACCAAGGTTAGTGTTGAAGTTCATATGGATGGAGAAAAACATCGGCCTAGCTTTGGACCAATTGATTCCAGGATACGAGACTATTCCAATCAGTCCTTACTATTTTTGGCCAAGGAAAGGTGCTTGGGAAGAGCTTAAGATCATGCTCGAGAGTAAGCCATGGATTTCTCATAAGCAGGTGATTATTCTTCT...
492 bp · LXL04_000687|LXL04_000687|OH1004|CDS
ATGAATATGAACCCTAGAAATTGGCTCAACTTGCATAAGCTGGGAGTGGTTGTGAAGCTGATGGAGAAACCAAGGTTAGTGTTGAAGTTCATATGGATGGAGAAAAACATCGGCCTAGCTTTGGACCAATTGATTCCAGGATACGAGACTATTCCAATCAGTCCTTACTATTTTTGGCCAAGGAAAGGTGCTTGGGAAGAGCTTAAGATCATGCTCGAGAGTAAGCCATGGATTTCTCATAAGCAGGTGATTATTCTTCT...
Protein
Download Protein FASTA163 aa · LXL04_000687|LXL04_000687|OH1004|PROTEIN
MNMNPRNWLNLHKLGVVVKLMEKPRLVLKFIWMEKNIGLALDQLIPGYETIPISPYYFWPRKGAWEELKIMLESKPWISHKQVIILLNQVTDIINLWQQTGGDIQEAKIGEDFALFIGARPPVVVNEFTRFMGAEVCNPYDIAGVNRHTAADNRQKCKVTIAY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000687 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000687 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:12633104-12634312 (+) | |||||||||
| Description | Similar to PSRP3: 30S ribosomal protein 3, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0032544 plastid translation Biological Process GO:0005739 mitochondrion Cellular Component GO:0005840 ribosome Cellular Component GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009579 thylakoid Cellular Component GO:1990904 ribonucleoprotein complex Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0019843 rRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G68590 ath:AT5G15760 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04839.19PSRP-3_Ycf6553-99 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000687 | PF04839.19 | PSRP-3_Ycf65 | 53 | 99 | 1.1e-24 | 87.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.