LXL04_000569 | RubberDandelionOmics

Gene overview

LXL04_000569

Reference: OH-1004 Chr: Chr01 Coordinates: 10412405-10415566 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1805 bp · LXL04_000569|LXL04_000569|OH1004|cDNA

aaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttactTTGGTGGATCCAAAAGTTTAAATTCTGTCGTTACAAATCCACCACAAGATGCCCAAACTGATCTCTGCGCAGACCAACTGCAGAAATGGCGCTTACTGCTTCAACACGACCTCTGTTTAACGACTTCAACCTTCCTTCGCATTCGCATTCGAAGAACCGAGTCCCTCCAATTCTTAGATCTCACGAAACTCGTATCTCAAACCCTAGTCATCTGCTGAGTTTC...

CDS

Download CDS FASTA

1704 bp · LXL04_000569|LXL04_000569|OH1004|CDS

CTGCGCAGACCAACTGCAGAAATGGCGCTTACTGCTTCAACACGACCTCTGTTTAACGACTTCAACCTTCCTTCGCATTCGCATTCGAAGAACCGAGTCCCTCCAATTCTTAGATCTCACGAAACTCGTATCTCAAACCCTAGTCATCTGCTGAGTTTCCCCCAGATCAGCAGCTCATTTTCACAAATTAACACTCAATTCAGATGCCCATTGTTCAAAAGCATGCCGTTAGTTTCATCTAGAAAGCTCAATTCGAAGGT...

Protein

Download Protein FASTA

567 aa · LXL04_000569|LXL04_000569|OH1004|PROTEIN

MRRPTAEMALTASTRPLFNDFNLPSHSHSKNRVPPILRSHETRISNPSHLLSFPQISSSFSQINTQFRCPLFKSMPLVSSRKLNSKVRASAAGEEAYQEDFSWTSVVLPFVFPALGGLLFGYDIGATSGATLSLQSAELSGTTWFNLTAVQVGLVVSGSLYGALFGSILVYPIADFLGRKRELLLAALLYALGGSVTAYAPGLGVLLLGRVLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000569`
TK1151 ID	TkA01G602310
OH-1004 ID	LXL04_000569
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 90.774 / OH-1004 97.002 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000569

Location Chr01:10412405-10415566 (+)

Description Similar to At5g59250: D-xylose-proton symporter-like 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59250`	D-xylose-proton symporter-like 3, chloroplastic.	No verified direct reference in this release
`At5g17010`	D-xylose-proton symporter-like 2.	No verified direct reference in this release
`At3g03090`	D-xylose-proton symporter-like 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000569 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0009845 seed germination Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0015755 fructose transmembrane transport Biological Process

GO:1904659 D-glucose transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT3G03090

ath:AT5G17010

ath:AT5G59250

bsu:BSU35830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.952

Rank 1 · LXL04_000569 · OH-1004

Golgi apparatus0.037

Rank 2 · LXL04_000569 · OH-1004

Endoplasmic reticulum0.034

Rank 3 · LXL04_000569 · OH-1004

Peroxisome0.028

Rank 4 · LXL04_000569 · OH-1004

Mitochondrion0.026

Rank 5 · LXL04_000569 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr112-563 aa

PF07690.22MFS_1116-514 aa

PF07690.22MFS_1409-554 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000569	`PF00083.31`	Sugar_tr	112	563	1.6e-93	314.7
LXL04_000569	`PF07690.22`	MFS_1	116	514	6.8e-27	95.0
LXL04_000569	`PF07690.22`	MFS_1	409	554	6.8e-27	95.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WWW9`	Arabidopsis thaliana	D-xylose-proton symporter-like 3, chloroplastic	72.114%	Swiss-Prot	strong database homology
`Q6AWX0`	Arabidopsis thaliana	D-xylose-proton symporter-like 2	61.734%	Swiss-Prot	strong database homology
`Q8L6Z8`	Arabidopsis thaliana	D-xylose-proton symporter-like 1	58.774%	Swiss-Prot	strong database homology

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