LXL04_000563 | RubberDandelionOmics

Gene overview

LXL04_000563

Reference: OH-1004 Chr: Chr01 Coordinates: 10369980-10372103 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · LXL04_000563|LXL04_000563|OH1004|cDNA

ATGGCTTCAGTTATCGAAGCTGGATGGACGTACATGATCACTCATTTCAGTGACTTCCAGCTAGCTTGTGTTGGTAGCTTTATTCTACATGAAGCTGTCTTCTTTTTGTCTGGACTTCCTTTCGTATACATAGAAAAGGCAGGATGGctcaaaaaatacaaaattcaGGCCAAGAACAACACAAGTGAAGCTCAAGAGAAATGCATCACTCGCCTTCTTCTGTATCATTTCTGTGTGAACCTTCCTGTCATGCTTGCTTC...

CDS

Download CDS FASTA

807 bp · LXL04_000563|LXL04_000563|OH1004|CDS

ATGGCTTCAGTTATCGAAGCTGGATGGACGTACATGATCACTCATTTCAGTGACTTCCAGCTAGCTTGTGTTGGTAGCTTTATTCTACATGAAGCTGTCTTCTTTTTGTCTGGACTTCCTTTCGTATACATAGAAAAGGCAGGATGGCTCAAAAAATACAAAATTCAGGCCAAGAACAACACAAGTGAAGCTCAAGAGAAATGCATCACTCGCCTTCTTCTGTATCATTTCTGTGTGAACCTTCCTGTCATGCTTGCTTC...

Protein

Download Protein FASTA

268 aa · LXL04_000563|LXL04_000563|OH1004|PROTEIN

MASVIEAGWTYMITHFSDFQLACVGSFILHEAVFFLSGLPFVYIEKAGWLKKYKIQAKNNTSEAQEKCITRLLLYHFCVNLPVMLASYPVFRFMGMRSSLPLPSWKVMSTQILFYFIVEDFIFYWGHRILHTKWLYKHIHSVHHEYATPFGLTSEYAHPAEILFLGFATIFGPAITGPHLITLWLWMVVRVLETVEAHCGYHFPWSPSNFLPLYGGSDFHDYHHRLIYTKSGNYSSTFVYMDWIFGTDHGYRKLKALKSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000563`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000563

Location Chr01:10369980-10372103 (+)

Description Similar to SMO2-2: Methylsterol monooxygenase 2-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07420`	Non-heme iron oxygenase involved in sterols biosynthesis by catalyzing the removal of the second methyl group at the C-4 position.	Functional identification of sterol-4alpha-methyl oxidase cDNAs from Arabidopsis thaliana by complementation of a yeast erg25 mutant lacking sterol-4alpha-methyl oxidation.2001 · DOI: 10.1016/s0014-5793(01)03002-2 Sterol Methyl Oxidases Affect Embryo Development via Auxin-Associated Mechanisms.2016 · DOI: 10.1104/pp.15.01814
`At2g29390`	Non-heme iron oxygenase involved in sterols biosynthesis by catalyzing the removal of the second methyl group at the C-4 position.	Sterol Methyl Oxidases Affect Embryo Development via Auxin-Associated Mechanisms.2016 · DOI: 10.1104/pp.15.01814

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0101500`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release
`UniProt: B8B6I2`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release
`Os11g0707600`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000563 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008610 lipid biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016126 sterol biosynthetic process Biological Process

GO:0080065 4-alpha-methyl-delta7-sterol oxidation Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0000254 C-4 methylsterol oxidase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0071771 aldehyde oxygenase (deformylating) activity Molecular Function

KEGG gene cross-reference

ath:AT1G07420

ath:AT2G29390

dosa:Os07g0101500

dosa:Os11g0707600

osa:4342171

osa:4351226

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.878

Rank 1 · LXL04_000563 · OH-1004

Cytoplasm0.065

Rank 2 · LXL04_000563 · OH-1004

Nucleus0.060

Rank 3 · LXL04_000563 · OH-1004

Mitochondrion0.053

Rank 4 · LXL04_000563 · OH-1004

Cell membrane0.049

Rank 5 · LXL04_000563 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04116.20FA_hydroxylase113-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000563	`PF04116.20`	FA_hydroxylase	113	247	1.3e-27	97.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VWZ8`	Arabidopsis thaliana	Methylsterol monooxygenase 2-2	82.090%	Swiss-Prot	strong database homology
`Q9ZW22`	Arabidopsis thaliana	Methylsterol monooxygenase 2-1	80.370%	Swiss-Prot	strong database homology
`Q69L93`	Oryza sativa subsp. japonica	Very-long-chain aldehyde decarbonylase GL1-8	71.923%	Swiss-Prot	strong database homology
`B8B6I2`	Oryza sativa subsp. indica	Very-long-chain aldehyde decarbonylase GL1-8	71.923%	Swiss-Prot	strong database homology
`Q2QZ14`	Oryza sativa subsp. japonica	Very-long-chain aldehyde decarbonylase GL1-11	72.692%	Swiss-Prot	strong database homology

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