LXL04_000474 | RubberDandelionOmics

Gene overview

LXL04_000474

Reference: OH-1004 Chr: Chr01 Coordinates: 8628739-8630918 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1059 bp · LXL04_000474|LXL04_000474|OH1004|cDNA

ATGAATCTACTCCAAGAAGAAGGATTACAACTTAGGGAAGTTCAAAGACTAGAAGGTCACACCGATAGGGTATGGGGTCTCGCTTGGAATCCGGCCACTGGCACTGCTGCTATACCTGCCATGCTCGCTTCATGCGGCGGCGATAAGACTGTTCGTATCTGGCAACAACGAAGCCCATCCTCCACGTCATTCGATTGCAAGGCAGTGTTAGAAGAGACTCATACCCGGACAGTTAGATCATGTGCCTGGGAACCATCTGG...

CDS

Download CDS FASTA

1059 bp · LXL04_000474|LXL04_000474|OH1004|CDS

ATGAATCTACTCCAAGAAGAAGGATTACAACTTAGGGAAGTTCAAAGACTAGAAGGTCACACCGATAGGGTATGGGGTCTCGCTTGGAATCCGGCCACTGGCACTGCTGCTATACCTGCCATGCTCGCTTCATGCGGCGGCGATAAGACTGTTCGTATCTGGCAACAACGAAGCCCATCCTCCACGTCATTCGATTGCAAGGCAGTGTTAGAAGAGACTCATACCCGGACAGTTAGATCATGTGCCTGGGAACCATCTGG...

Protein

Download Protein FASTA

352 aa · LXL04_000474|LXL04_000474|OH1004|PROTEIN

MNLLQEEGLQLREVQRLEGHTDRVWGLAWNPATGTAAIPAMLASCGGDKTVRIWQQRSPSSTSFDCKAVLEETHTRTVRSCAWEPSGKKLATASFDATTAILEQNGNDFDCVSTLEGHENEVKSVSWNASGSLLATCSRDKCVWIWEVLPGDEYDCVSVLQGHTQDVKMVQWHPTVDVLFSCSYDNTIKVWAEDGDSDDWRCVQTLGESNNGHTSTVWALAFNKTGDKMATCSDDLTIKIWGVDIASLQSGDDNASWRHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000474`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000474

Location Chr01:8628739-8630918 (+)

Description Similar to CIA1: Protein CIA1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26060`	Essential component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000474 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016226 iron-sulfur cluster assembly Biological Process

GO:0051604 protein maturation Biological Process

GO:0005634 nucleus Cellular Component

GO:0097361 cytosolic [4Fe-4S] assembly targeting complex Cellular Component

KEGG gene cross-reference

ath:AT2G26060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.583

Rank 1 · LXL04_000474 · OH-1004

Nucleus0.511

Rank 2 · LXL04_000474 · OH-1004

Cell membrane0.077

Rank 3 · LXL04_000474 · OH-1004

Lysosome / Vacuole0.077

Rank 4 · LXL04_000474 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_000474 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25391.2WD40_Gbeta9-292 aa

PF25175.2Beta-prop_WDR512-148 aa

PF25174.2Beta-prop_THOC312-62 aa

PF00400.39WD4013-54 aa

PF24807.2WD40_CDC20-Fz13-89 aa

PF23381.2Beta-prop_IFT122_1st14-103 aa

PF24814.2WD40_Prp1914-148 aa

PF25172.2Beta-prop_WDR3_2nd14-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000474	`PF25391.2`	WD40_Gbeta	9	292	1.8e-11	44.4
LXL04_000474	`PF25175.2`	Beta-prop_WDR5	12	148	8.3e-66	222.9
LXL04_000474	`PF25174.2`	Beta-prop_THOC3	12	62	1.4e-51	175.9
LXL04_000474	`PF00400.39`	WD40	13	54	5.8e-57	188.4
LXL04_000474	`PF24807.2`	WD40_CDC20-Fz	13	89	2.2e-32	113.3
LXL04_000474	`PF23381.2`	Beta-prop_IFT122_1st	14	103	8.7e-49	167.0
LXL04_000474	`PF24814.2`	WD40_Prp19	14	148	5.8e-39	134.5
LXL04_000474	`PF25172.2`	Beta-prop_WDR3_2nd	14	241	3.9e-28	99.2
LXL04_000474	`PF24817.2`	WD40_WDHD1_1st	14	149	7.8e-27	94.9
LXL04_000474	`PF25460.2`	Beta-prop_Aladin	23	99	1.8e-16	60.9
LXL04_000474	`PF23414.2`	Beta-prop_EML_2	24	192	3.3e-27	96.2
LXL04_000474	`PF25047.1`	Beta-prop_TEP1_2nd	30	97	1.4e-21	77.5
LXL04_000474	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	37	159	2e-12	47.8
LXL04_000474	`PF24105.2`	Beta-prop_CAF1B_HIR1	41	148	4.7e-26	92.4
LXL04_000474	`PF23775.2`	Beta-prop_RIG_2nd	43	294	2e-15	57.7
LXL04_000474	`PF25173.2`	Beta-prop_WDR3_1st	69	242	6e-39	134.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80990`	Arabidopsis thaliana	Protein CIA1	70.605%	Swiss-Prot	strong database homology

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