Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-21 SAMC997364	`CRR618603` CRX553521	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618603_f1.fq.gz` 2,686,936,906 bytes MD5 864a2695e3d396e70b366aa182cd00b8	HTTPS `CRR618603_r2.fq.gz` 2,773,743,682 bytes MD5 d260065274469eaed50eec03c6e6a4aa
F1-30 SAMC997365	`CRR618604` CRX553522	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618604_f1.fq.gz` 2,626,403,275 bytes MD5 f617fb6656da153fb86afe715b907250	HTTPS `CRR618604_r2.fq.gz` 2,742,591,993 bytes MD5 a51958c872791adce89a897ecd096bbd
F1-33 SAMC997366	`CRR618605` CRX553523	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618605_f1.fq.gz` 2,435,270,336 bytes MD5 1f5918c37a418c3e6b0a760b697acafc	HTTPS `CRR618605_r2.fq.gz` 2,559,335,856 bytes MD5 a7b4c7cbab099ac66152ceceb0cbd790
F1-34 SAMC997367	`CRR618606` CRX553524	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618606_f1.fq.gz` 2,517,285,357 bytes MD5 26497e088c4f89ece23310ef6bf8bd68	HTTPS `CRR618606_r2.fq.gz` 2,658,944,090 bytes MD5 8d1717ee8fea4ccc87e715ec6600384f
F1-36 SAMC997368	`CRR618607` CRX553525	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618607_f1.fq.gz` 2,079,978,166 bytes MD5 9749d10b2ff056913f50bdd768b368bf	HTTPS `CRR618607_r2.fq.gz` 2,172,537,903 bytes MD5 01f51bb016fed4d62c6cae45cd96c0e8
F1-37 SAMC997369	`CRR618608` CRX553526	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618608_f1.fq.gz` 2,290,975,011 bytes MD5 15b051afb83684de7b57f5bd56db00c8	HTTPS `CRR618608_r2.fq.gz` 2,374,891,769 bytes MD5 b0bce43517885fa6c1137dadb70474d2
F1-40 SAMC997370	`CRR618609` CRX553527	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618609_f1.fq.gz` 2,186,164,607 bytes MD5 db42db8563ee212398b724147bc66925	HTTPS `CRR618609_r2.fq.gz` 2,304,273,340 bytes MD5 6855616147cc3220cf15943d8a831dfc
F1-42 SAMC997371	`CRR618610` CRX553528	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618610_f1.fq.gz` 2,411,688,143 bytes MD5 104452636f68fd78d228952824ce80a5	HTTPS `CRR618610_r2.fq.gz` 2,523,743,917 bytes MD5 07a7cdb9ce72c3cd8b5a9bb6bb0a7e6d
F1-43 SAMC997372	`CRR618611` CRX553529	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618611_f1.fq.gz` 2,475,704,404 bytes MD5 320db3d52a98f68c2600ae7c6a239ba5	HTTPS `CRR618611_r2.fq.gz` 2,567,077,039 bytes MD5 63002b24521c6e652c9100ca8048e21a

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