Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-134 SAMC997344	`CRR618583` CRX553501	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618583_f1.fq.gz` 2,129,393,768 bytes MD5 c1e911f8e9723dc2ca8a687046799089	HTTPS `CRR618583_r2.fq.gz` 2,325,676,113 bytes MD5 b9ecb348df215997ccbbc26d532db53f
F1-135 SAMC997345	`CRR618584` CRX553502	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618584_f1.fq.gz` 2,670,705,371 bytes MD5 396ce36024226e45dec330af6530b8fd	HTTPS `CRR618584_r2.fq.gz` 2,763,506,726 bytes MD5 d27d99c092f099477bd553c5d6b96127
F1-136 SAMC997346	`CRR618585` CRX553503	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618585_f1.fq.gz` 2,359,903,946 bytes MD5 1d399c31c99445e9f95ed80974022941	HTTPS `CRR618585_r2.fq.gz` 2,462,828,455 bytes MD5 74f24fcfdc438c95aeb6a22f5eae6a84
F1-137 SAMC997347	`CRR618586` CRX553504	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618586_f1.fq.gz` 2,280,767,720 bytes MD5 911e7db42dc27c6a92d9ee4d42f696ec	HTTPS `CRR618586_r2.fq.gz` 2,389,541,407 bytes MD5 62dc1e53785608bd1fc3ed762fe93545
F1-138 SAMC997348	`CRR618587` CRX553505	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618587_f1.fq.gz` 2,321,842,587 bytes MD5 a054046e44a5eb03b76fef73293090e0	HTTPS `CRR618587_r2.fq.gz` 2,394,792,997 bytes MD5 bc51f62a85dee37c2d6ac74cab9a349c
F1-139 SAMC997349	`CRR618588` CRX553506	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618588_f1.fq.gz` 2,587,718,756 bytes MD5 5e097c658bc8c6eb720e42a7914b5855	HTTPS `CRR618588_r2.fq.gz` 2,677,791,141 bytes MD5 a6999662230517740d56e62f9bc5bd3b
F1-140 SAMC997350	`CRR618589` CRX553507	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618589_f1.fq.gz` 2,221,054,386 bytes MD5 f76cac6c2b8ecd3e3a60f27ae9b9a18f	HTTPS `CRR618589_r2.fq.gz` 2,305,619,715 bytes MD5 efee169257699bde505eeb1cf6953318
F1-141 SAMC997351	`CRR618590` CRX553508	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618590_f1.fq.gz` 2,253,634,471 bytes MD5 191d01a1a83d20d51d60a6ddf92db3c6	HTTPS `CRR618590_r2.fq.gz` 2,378,237,545 bytes MD5 498dbd59fe5e151c1c55eef534f46db9
F1-142 SAMC997352	`CRR618591` CRX553509	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618591_f1.fq.gz` 2,298,591,656 bytes MD5 38de75d1c9f24961057732d1d0bbcd38	HTTPS `CRR618591_r2.fq.gz` 2,385,150,284 bytes MD5 e8b460dd698d07d20fae80ef31a5874f
F1-143 SAMC997353	`CRR618592` CRX553510	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618592_f1.fq.gz` 2,327,603,108 bytes MD5 9cb0d9ff659e94c92baf627043aac2ac	HTTPS `CRR618592_r2.fq.gz` 2,411,010,165 bytes MD5 b9e66c85944b21650f4e8a2c0fca8f1d
F1-144 SAMC997354	`CRR618593` CRX553511	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618593_f1.fq.gz` 2,278,553,702 bytes MD5 e7c569d004009543faee405ae8f3ef90	HTTPS `CRR618593_r2.fq.gz` 2,364,090,994 bytes MD5 0d7fd36ddddb73adc2e682c215f3727c
F1-145 SAMC997355	`CRR618594` CRX553512	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618594_f1.fq.gz` 2,238,200,619 bytes MD5 97e98861782a7e756b3b4b744d5d6534	HTTPS `CRR618594_r2.fq.gz` 2,352,591,987 bytes MD5 1b0b0d4ead85fb063d2647acfa1e57b8
F1-146 SAMC997356	`CRR618595` CRX553513	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618595_f1.fq.gz` 2,144,789,537 bytes MD5 6e871209c6e9576af47a165b569e2ae6	HTTPS `CRR618595_r2.fq.gz` 2,230,344,199 bytes MD5 2eb98e18eed1f9befbf45988c45bbab1
F1-147 SAMC997357	`CRR618596` CRX553514	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618596_f1.fq.gz` 2,098,606,569 bytes MD5 0261c4d74fa94de602431c372f6ad7dd	HTTPS `CRR618596_r2.fq.gz` 2,191,831,631 bytes MD5 bb7195ec7b3647452d08073f861a890c
F1-148 SAMC997358	`CRR618597` CRX553515	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618597_f1.fq.gz` 2,514,621,755 bytes MD5 4a84afe2b6a070a4d40320c21a270cf4	HTTPS `CRR618597_r2.fq.gz` 2,642,134,828 bytes MD5 12ab7b5679fb09b1fe183e564e1f8ecb
F1-149 SAMC997359	`CRR618598` CRX553516	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618598_f1.fq.gz` 2,388,430,387 bytes MD5 3618fe6b086a2aebd61a712f298cfee6	HTTPS `CRR618598_r2.fq.gz` 2,494,219,773 bytes MD5 fff09e46c67f09559f685c5cd11e48aa
F1-7 SAMC997360	`CRR618599` CRX553517	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618599_f1.fq.gz` 2,302,280,831 bytes MD5 d0f5bf12aa2cbfc4bc24afcb0e2b4810	HTTPS `CRR618599_r2.fq.gz` 2,450,155,422 bytes MD5 561df2cce116cf2dbe1a1267b1771ad7
F1-15 SAMC997361	`CRR618600` CRX553518	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618600_f1.fq.gz` 2,483,691,049 bytes MD5 ac93c8fa3d50f105db01342ade2f0bd8	HTTPS `CRR618600_r2.fq.gz` 2,618,457,404 bytes MD5 9c0b3667655aa4effb262dbda8376bb1
F1-18 SAMC997362	`CRR618601` CRX553519	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618601_f1.fq.gz` 2,471,666,712 bytes MD5 20072df03ea58dc2b137eca3f7273a20	HTTPS `CRR618601_r2.fq.gz` 2,575,877,346 bytes MD5 c0f339ea4592a470d065b39a2538b87d
F1-20 SAMC997363	`CRR618602` CRX553520	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618602_f1.fq.gz` 2,069,194,250 bytes MD5 3515d13482a5a77c4b7fcf74b3836448	HTTPS `CRR618602_r2.fq.gz` 2,125,069,969 bytes MD5 dd0c7db7ae8c4e283b102fc4256d7606

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