Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-114 SAMC997324	`CRR618563` CRX553481	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618563_f1.fq.gz` 2,238,793,827 bytes MD5 545e48c93150e5016a9b96820cb4f101	HTTPS `CRR618563_r2.fq.gz` 2,313,443,195 bytes MD5 e72671e885a3aa418327a33ff553dd34
F1-115 SAMC997325	`CRR618564` CRX553482	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618564_f1.fq.gz` 2,259,326,476 bytes MD5 dfde81788908a6eecbfa8baeee6a855f	HTTPS `CRR618564_r2.fq.gz` 2,332,346,670 bytes MD5 f231f4e3e35b2aa303f5ef954437ad5e
F1-116 SAMC997326	`CRR618565` CRX553483	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618565_f1.fq.gz` 2,188,911,969 bytes MD5 d149e286cfcb4eacaeccb54247b21e30	HTTPS `CRR618565_r2.fq.gz` 2,259,860,742 bytes MD5 dcf3887f097639308a57c5079a55be96
F1-117 SAMC997327	`CRR618566` CRX553484	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618566_f1.fq.gz` 2,537,131,661 bytes MD5 ff33c1a08c4120dbc2ecd988ed42fe85	HTTPS `CRR618566_r2.fq.gz` 2,644,777,573 bytes MD5 42ddff70ea72047195fabf5472856e70
F1-118 SAMC997328	`CRR618567` CRX553485	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618567_f1.fq.gz` 2,436,147,827 bytes MD5 cab5a5ef114a11d69a01ee8725458f9b	HTTPS `CRR618567_r2.fq.gz` 2,558,699,739 bytes MD5 fa64f9129b13b0c9e32762717c60fe80
F1-119 SAMC997329	`CRR618568` CRX553486	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618568_f1.fq.gz` 2,678,220,057 bytes MD5 8fd1fc2ca177e0dd47bcf9b796d88eee	HTTPS `CRR618568_r2.fq.gz` 2,783,127,898 bytes MD5 d47838a585bb0a4a23bff86c0e43b5a9
F1-120 SAMC997330	`CRR618569` CRX553487	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618569_f1.fq.gz` 2,164,714,912 bytes MD5 fa31687475bb5c4af4df3bc4aee19559	HTTPS `CRR618569_r2.fq.gz` 2,248,497,666 bytes MD5 632d801116d4b4a671e37119a4da2f7c
F1-121 SAMC997331	`CRR618570` CRX553488	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618570_f1.fq.gz` 2,485,660,888 bytes MD5 6b812841887516aefc458e3a5c57c207	HTTPS `CRR618570_r2.fq.gz` 2,588,373,014 bytes MD5 c400e9c2a4216b94aecc4a3a4248444b
F1-122 SAMC997332	`CRR618571` CRX553489	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618571_f1.fq.gz` 2,246,131,945 bytes MD5 23952e10ba5c4d8a3295b898e6675cb5	HTTPS `CRR618571_r2.fq.gz` 2,331,811,202 bytes MD5 6588ccf2db7ed9ddd5d58f22d0df6760
F1-123 SAMC997333	`CRR618572` CRX553490	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618572_f1.fq.gz` 2,267,413,464 bytes MD5 17af2e4dd6ddf39af08a3596b23a7d74	HTTPS `CRR618572_r2.fq.gz` 2,360,764,344 bytes MD5 b743dd3e8945fadf2245022a56aeb7e4
F1-124 SAMC997334	`CRR618573` CRX553491	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618573_f1.fq.gz` 2,099,407,827 bytes MD5 b53d9687e1b9be6be65c9429399c0dc3	HTTPS `CRR618573_r2.fq.gz` 2,180,658,006 bytes MD5 a62751fe187b4bb7f81a62b614bde20c
F1-125 SAMC997335	`CRR618574` CRX553492	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618574_f1.fq.gz` 2,282,049,372 bytes MD5 d556be5577cfadf9dfe7fdbc89fbcbd5	HTTPS `CRR618574_r2.fq.gz` 2,334,070,076 bytes MD5 5e538a6c9f837fa5ea8b4a56c8e33dea
F1-126 SAMC997336	`CRR618575` CRX553493	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618575_f1.fq.gz` 2,587,794,045 bytes MD5 70345f20d459761aab88eb260e22a3e4	HTTPS `CRR618575_r2.fq.gz` 2,718,006,726 bytes MD5 c03ac94f6cdaeef28560f238c4a10577
F1-127 SAMC997337	`CRR618576` CRX553494	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618576_f1.fq.gz` 2,135,566,749 bytes MD5 0314d62100f6380c184a22b8d6b2559d	HTTPS `CRR618576_r2.fq.gz` 2,203,443,336 bytes MD5 d3b1be5fad427002143c2937825bbd5c
F1-128 SAMC997338	`CRR618577` CRX553495	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618577_f1.fq.gz` 2,441,196,379 bytes MD5 0d258476063f6e6863c954a69f5e175e	HTTPS `CRR618577_r2.fq.gz` 2,538,050,893 bytes MD5 3197dfd5e4c1e0822f22aeab6da70a81
F1-129 SAMC997339	`CRR618578` CRX553496	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618578_f1.fq.gz` 2,409,584,278 bytes MD5 db726991bb1eea07a19dbdaa21d3de20	HTTPS `CRR618578_r2.fq.gz` 2,475,294,951 bytes MD5 f03701edcef3bd74604a93c01851567c
F1-130 SAMC997340	`CRR618579` CRX553497	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618579_f1.fq.gz` 2,154,762,786 bytes MD5 5bf8c2a641fb7a26f4999eda7b72bf86	HTTPS `CRR618579_r2.fq.gz` 2,234,273,116 bytes MD5 c533ad64e0f0b5e199ce00cd4d8a6688
F1-131 SAMC997341	`CRR618580` CRX553498	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618580_f1.fq.gz` 2,379,958,687 bytes MD5 7f6cdedeea33eed47d8d1994f687c958	HTTPS `CRR618580_r2.fq.gz` 2,467,522,427 bytes MD5 25c3eb28a5ad995e58c2ada447f9c7d8
F1-132 SAMC997342	`CRR618581` CRX553499	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618581_f1.fq.gz` 2,381,124,335 bytes MD5 1e77f6607598a3f33f2c047ca7211631	HTTPS `CRR618581_r2.fq.gz` 2,503,157,985 bytes MD5 9384dd2ce858b6c46cca68751ec48808
F1-133 SAMC997343	`CRR618582` CRX553500	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618582_f1.fq.gz` 2,786,910,816 bytes MD5 2f4232170140191020977a2b68105311	HTTPS `CRR618582_r2.fq.gz` 2,877,991,584 bytes MD5 4982ef649c56bd19a0776b932d07186c

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