Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-94 SAMC997304	`CRR618543` CRX553461	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618543_f1.fq.gz` 2,183,350,054 bytes MD5 7a237d0970043de78b9acc75cd7dd10c	HTTPS `CRR618543_r2.fq.gz` 2,268,215,103 bytes MD5 d523846ab256a62912494ce59b42c0c1
F1-95 SAMC997305	`CRR618544` CRX553462	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618544_f1.fq.gz` 2,120,472,489 bytes MD5 65712c6e410232ce6b339d13ed54f54e	HTTPS `CRR618544_r2.fq.gz` 2,174,572,579 bytes MD5 c6f74b69dd21d7b283166b90e735513f
F1-96 SAMC997306	`CRR618545` CRX553463	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618545_f1.fq.gz` 2,431,097,996 bytes MD5 4bb343802c96474e26b73b3c6bf53d08	HTTPS `CRR618545_r2.fq.gz` 2,535,367,803 bytes MD5 78d419a806a61f2b4f463db3ff18a31b
F1-97 SAMC997307	`CRR618546` CRX553464	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618546_f1.fq.gz` 2,384,945,798 bytes MD5 2dfd265931b8d34fa729afd9826ff320	HTTPS `CRR618546_r2.fq.gz` 2,448,675,158 bytes MD5 f561dd94584650d42abdd0b3490f53b4
F1-98 SAMC997308	`CRR618547` CRX553465	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618547_f1.fq.gz` 2,155,120,422 bytes MD5 420a4b35979b6d8a301244587f851e51	HTTPS `CRR618547_r2.fq.gz` 2,231,062,760 bytes MD5 f2cf53b8616df4005e5bc2e196d4825c
F1-99 SAMC997309	`CRR618548` CRX553466	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618548_f1.fq.gz` 2,098,594,462 bytes MD5 8c1537f240fb87467be6c6b09530f6ce	HTTPS `CRR618548_r2.fq.gz` 2,213,065,898 bytes MD5 c59dc9808af93e74ef5dce9c4b2c5114
F1-100 SAMC997310	`CRR618549` CRX553467	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618549_f1.fq.gz` 2,137,889,497 bytes MD5 ef8ebde8241ec4f022875c8d017cccec	HTTPS `CRR618549_r2.fq.gz` 2,208,151,281 bytes MD5 f3493db147ffc94ce27fe5239d5d2ee2
F1-101 SAMC997311	`CRR618550` CRX553468	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618550_f1.fq.gz` 2,118,912,355 bytes MD5 f266116d73cf309fa42747a038bfebb1	HTTPS `CRR618550_r2.fq.gz` 2,191,627,759 bytes MD5 ba48894ef3ca9e6d9969a81a1b58ef02
F1-102 SAMC997312	`CRR618551` CRX553469	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618551_f1.fq.gz` 2,257,999,503 bytes MD5 89db994895c3817340ca5203389277c1	HTTPS `CRR618551_r2.fq.gz` 2,327,692,945 bytes MD5 2ec3edd1ef39347b33a7ec605829ff56
F1-103 SAMC997313	`CRR618552` CRX553470	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618552_f1.fq.gz` 2,130,909,332 bytes MD5 dcf821f6a30bafd41b51da85b69a883c	HTTPS `CRR618552_r2.fq.gz` 2,190,674,905 bytes MD5 95d2ca157fc92fdd1d39ea49383be51e
F1-104 SAMC997314	`CRR618553` CRX553471	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618553_f1.fq.gz` 2,113,794,405 bytes MD5 28ca0c4259480f3ff19eac4ddc5a779a	HTTPS `CRR618553_r2.fq.gz` 2,188,627,400 bytes MD5 a13b50bbec0213a7d519cd95ccdbabce
F1-105 SAMC997315	`CRR618554` CRX553472	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618554_f1.fq.gz` 2,587,896,965 bytes MD5 63f2a74c22fbae224376b223b7ed00ac	HTTPS `CRR618554_r2.fq.gz` 2,687,978,207 bytes MD5 1745dcb7739c9047eead13a7c0cc5adf
F1-106 SAMC997316	`CRR618555` CRX553473	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618555_f1.fq.gz` 2,046,134,131 bytes MD5 d1dd0950149fec617246033569e636bc	HTTPS `CRR618555_r2.fq.gz` 2,136,619,501 bytes MD5 13a2eeddcfd01ef68878cf9a698be2e1
F1-107 SAMC997317	`CRR618556` CRX553474	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618556_f1.fq.gz` 2,774,524,990 bytes MD5 2036d0bf5758dab487652777c5a71755	HTTPS `CRR618556_r2.fq.gz` 2,855,250,014 bytes MD5 74931a04113aa20acd8f0029844c890b
F1-108 SAMC997318	`CRR618557` CRX553475	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618557_f1.fq.gz` 2,535,797,437 bytes MD5 c5d8769df1d5f73958ece440e7319e85	HTTPS `CRR618557_r2.fq.gz` 2,637,350,979 bytes MD5 fa96328af716fa319fa41dc6b3874e0e
F1-109 SAMC997319	`CRR618558` CRX553476	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618558_f1.fq.gz` 2,468,010,343 bytes MD5 f1b41c26bf0799aaf6bfaba6116700fa	HTTPS `CRR618558_r2.fq.gz` 2,542,765,428 bytes MD5 8b341a946dced568e87cfd166954c655
F1-110 SAMC997320	`CRR618559` CRX553477	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618559_f1.fq.gz` 2,269,990,998 bytes MD5 8c0a85f3cabc388abf8ac4847d09f010	HTTPS `CRR618559_r2.fq.gz` 2,343,151,291 bytes MD5 eed81b0dad1323d8586b90c1e8ea839e
F1-111 SAMC997321	`CRR618560` CRX553478	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618560_f1.fq.gz` 2,756,289,213 bytes MD5 71d71a9cfe7773a4ce5dd19aa644a729	HTTPS `CRR618560_r2.fq.gz` 2,859,550,463 bytes MD5 1edc4ee0fa3a3317a42cd42e32fe3c80
F1-112 SAMC997322	`CRR618561` CRX553479	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618561_f1.fq.gz` 2,168,488,344 bytes MD5 25bc6ccec87d160c8d80e5a63d0b6d0a	HTTPS `CRR618561_r2.fq.gz` 2,235,837,213 bytes MD5 5aaf856a1558f403f73a0548dfbe2fba
F1-113 SAMC997323	`CRR618562` CRX553480	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618562_f1.fq.gz` 2,437,455,994 bytes MD5 55dfb6e55d929ff64bc195f3f40bb23b	HTTPS `CRR618562_r2.fq.gz` 2,512,572,927 bytes MD5 9af75bd0d71142d41eb34f9160b2685f

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