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PUBLISHED MAPPING · F1 FAMILY

Natural rubber content QTLs

Explore published loci, region genes and material phenotypes.

6 QTL2 linkage groups127 F1Yang et al., 2023

Major mapped ChrA6 region

Genes between qHRC-C6-1 and qHRC-C6-2, retaining source IDs and annotations.

Download current gene results TSV
Example:TkA06G095920All region genes

122 matching genes

Gene IDSource homology annotation
TkA06G091380uncharacterized protein LOC111909573 [Lactuca sativa]
TkA06G091470--
TkA06G091780unnamed protein product [Lactuca saligna]
TkA06G091870--
TkA06G091980--
TkA06G091990adenylate isopentenyltransferase-like [Lactuca sativa]
TkA06G092060polyadenylate-binding protein 1-like [Lactuca sativa]
TkA06G092080zinc finger protein JAGGED-like isoform X2 [Lactuca sativa]
TkA06G09211050S ribosomal protein L15, chloroplastic [Cynara cardunculus var. scolymus]
TkA06G092230--
TkA06G092240unnamed protein product [Lactuca saligna]
TkA06G092390unnamed protein product [Lactuca saligna]
TkA06G092520uncharacterized protein LOC111904543 [Lactuca sativa]
TkA06G092570uncharacterized protein LOC111878805 [Lactuca sativa]
TkA06G092640uncharacterized protein At2g29880-like [Lactuca sativa]
TkA06G092660unnamed protein product [Lactuca saligna]
TkA06G092710unnamed protein product [Lactuca saligna]
TkA06G092760uncharacterized protein LOC111877900, partial [Lactuca sativa]
TkA06G092870uncharacterized protein LOC112506317 [Cynara cardunculus var. scolymus]
TkA06G092940--
TkA06G092950protein FLX-like 3 [Lactuca sativa]
TkA06G092960unnamed protein product [Lactuca saligna]
TkA06G092990hypothetical protein F3Y22_tig00110015pilonHSYRG00202 [Hibiscus syriacus]
TkA06G093010uncharacterized protein LOC111904613 [Lactuca sativa]
TkA06G093020uncharacterized protein LOC111904548 [Lactuca sativa]

Source-reference IDs are preserved; region membership and homology annotations are candidate evidence.

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Data sources and interpretation

Yang Y, et al. (2023). BMC Genomics 24:13. DOI: 10.1186/s12864-022-09105-3

Loci: Table 3; region genes: supplementary Table S4; phenotypes: supplementary Table S7. Source cells are retained in TSV downloads. Source reference genome: GWHBCHF00000000.

  • Marker extents are not QTL confidence intervals and have not been lifted to other website references. Old region-gene IDs are not automatically equated to current models. PVE/LOD are published values; no GWAS was recomputed.
  • Table PVE values for the two major ChrA6 QTLs are 24.45% and 23.82% (sum 48.27%), while the abstract states 65.62%. The sum is not an independently estimated joint PVE.
  • R01 is 2.92% in the phenotype supplement, whereas parent 166 is 2.09% in the main text. Both values are preserved; paper-to-repository identities remain unresolved.

CRA009020 · GVM000440 · Published mapping table