Proteomics query
Enter gene or protein IDs and select one or more datasets to view abundance, replicate identification and 2-DE evidence.
3 selectable datasets · 3 independent public projects · 56 LFQ experiments plus 3 mature-root identification replicates
Projects are shown separately with independent plot scales; LFQ intensities are not directly comparable across projects. Aliases resolved to the same gene are deduplicated; multiple protein groups linked to a gene are summarized separately.
Examples
ID Resolution
| Input ID | Display ID | Linked lookup ID | Protein groups | Values | Status |
|---|---|---|---|---|---|
TkA03G080100 | TkA03G080100 | LXL04_006847 | 8327 | 36 | Resolved |
Group Summary
Download current dataset and queried genes (TSV)
Mean LFQ intensity, sample SD, SE and experiment count n are computed for each protein group using source time/group labels, retaining source zeros. Bars show mean LFQ intensity with an independent scale per dataset.
| Gene / protein ID | Protein group | Tissue/sample | Material/group | Sampling age | Mean intensity | SD | SE | n | Unit |
|---|---|---|---|---|---|---|---|---|---|
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding control | 8 weeks old | 1.23752e+08 | 2.81153e+07 | 1.40576e+07 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 8 weeks old | 7.57758e+07 | 1.06058e+07 | 5.30291e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Non-exuding line | 8 weeks old | 6.40782e+07 | 1.32112e+07 | 6.6056e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding control | 12 weeks old | 6.4721e+07 | 1.57515e+07 | 7.87576e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 12 weeks old | 5.68002e+07 | 3.09909e+07 | 1.54954e+07 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Non-exuding line | 12 weeks old | 7.23522e+07 | 1.22854e+07 | 6.14268e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding control | 24 weeks old | 7.88205e+07 | 1.29623e+07 | 6.48117e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 24 weeks old | 9.5533e+07 | 5.90822e+06 | 2.95411e+06 | 4 | LFQ intensity |
TkA03G080100 | 8327 | Root tissue (whole-root protein extract) | Non-exuding line | 24 weeks old | 4.7377e+07 | 3.57642e+07 | 1.78821e+07 | 4 | LFQ intensity |
Sample-Level Protein Abundance
| Gene / protein ID | Protein group | Sample | Tissue/sample | Material/group | Sampling age | Replicate | Abundance | Unit | Source |
|---|---|---|---|---|---|---|---|---|---|
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding control · Biological replicate 1PAP73 | Root tissue (whole-root protein extract) | Latex-exuding control | 8 weeks old | Biological replicate 1 | 116250000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding control · Biological replicate 2PAP74 | Root tissue (whole-root protein extract) | Latex-exuding control | 8 weeks old | Biological replicate 2 | 97209000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding control · Biological replicate 3PAP75 | Root tissue (whole-root protein extract) | Latex-exuding control | 8 weeks old | Biological replicate 3 | 118070000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding control · Biological replicate 4PAP76 | Root tissue (whole-root protein extract) | Latex-exuding control | 8 weeks old | Biological replicate 4 | 163480000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding transgenic control · Biological replicate 1PAP77 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 8 weeks old | Biological replicate 1 | 60869000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding transgenic control · Biological replicate 2PAP78 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 8 weeks old | Biological replicate 2 | 85388000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding transgenic control · Biological replicate 3PAP79 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 8 weeks old | Biological replicate 3 | 80524000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Latex-exuding transgenic control · Biological replicate 4PAP80 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 8 weeks old | Biological replicate 4 | 76322000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Non-exuding line · Biological replicate 1PAP81 | Root tissue (whole-root protein extract) | Non-exuding line | 8 weeks old | Biological replicate 1 | 66385000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Non-exuding line · Biological replicate 2PAP82 | Root tissue (whole-root protein extract) | Non-exuding line | 8 weeks old | Biological replicate 2 | 49701000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Non-exuding line · Biological replicate 3PAP83 | Root tissue (whole-root protein extract) | Non-exuding line | 8 weeks old | Biological replicate 3 | 81039000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 8 weeks old · Non-exuding line · Biological replicate 4PAP84 | Root tissue (whole-root protein extract) | Non-exuding line | 8 weeks old | Biological replicate 4 | 59188000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding control · Biological replicate 1PAP85 | Root tissue (whole-root protein extract) | Latex-exuding control | 12 weeks old | Biological replicate 1 | 81398000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding control · Biological replicate 2PAP86 | Root tissue (whole-root protein extract) | Latex-exuding control | 12 weeks old | Biological replicate 2 | 45394000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding control · Biological replicate 3PAP87 | Root tissue (whole-root protein extract) | Latex-exuding control | 12 weeks old | Biological replicate 3 | 72723000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding control · Biological replicate 4PAP88 | Root tissue (whole-root protein extract) | Latex-exuding control | 12 weeks old | Biological replicate 4 | 59369000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding transgenic control · Biological replicate 1PAP89 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 12 weeks old | Biological replicate 1 | 35241000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding transgenic control · Biological replicate 2PAP90 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 12 weeks old | Biological replicate 2 | 52202000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding transgenic control · Biological replicate 3PAP91 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 12 weeks old | Biological replicate 3 | 101920000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Latex-exuding transgenic control · Biological replicate 4PAP92 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 12 weeks old | Biological replicate 4 | 37838000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Non-exuding line · Biological replicate 1PAP93 | Root tissue (whole-root protein extract) | Non-exuding line | 12 weeks old | Biological replicate 1 | 87840000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Non-exuding line · Biological replicate 2PAP94 | Root tissue (whole-root protein extract) | Non-exuding line | 12 weeks old | Biological replicate 2 | 76434000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Non-exuding line · Biological replicate 3PAP95 | Root tissue (whole-root protein extract) | Non-exuding line | 12 weeks old | Biological replicate 3 | 64113000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 12 weeks old · Non-exuding line · Biological replicate 4PAP96 | Root tissue (whole-root protein extract) | Non-exuding line | 12 weeks old | Biological replicate 4 | 61022000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding control · Biological replicate 1PAP97 | Root tissue (whole-root protein extract) | Latex-exuding control | 24 weeks old | Biological replicate 1 | 69376000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding control · Biological replicate 2PAP98 | Root tissue (whole-root protein extract) | Latex-exuding control | 24 weeks old | Biological replicate 2 | 67906000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding control · Biological replicate 3PAP99 | Root tissue (whole-root protein extract) | Latex-exuding control | 24 weeks old | Biological replicate 3 | 82348000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding control · Biological replicate 4PAP100 | Root tissue (whole-root protein extract) | Latex-exuding control | 24 weeks old | Biological replicate 4 | 95652000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding transgenic control · Biological replicate 1PAP101 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 24 weeks old | Biological replicate 1 | 90271000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding transgenic control · Biological replicate 2PAP102 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 24 weeks old | Biological replicate 2 | 93240000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding transgenic control · Biological replicate 3PAP103 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 24 weeks old | Biological replicate 3 | 94661000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Latex-exuding transgenic control · Biological replicate 4PAP104 | Root tissue (whole-root protein extract) | Latex-exuding transgenic control | 24 weeks old | Biological replicate 4 | 103960000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Non-exuding line · Biological replicate 1PAP105 | Root tissue (whole-root protein extract) | Non-exuding line | 24 weeks old | Biological replicate 1 | 75286000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Non-exuding line · Biological replicate 2PAP106 | Root tissue (whole-root protein extract) | Non-exuding line | 24 weeks old | Biological replicate 2 | 39444000.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Non-exuding line · Biological replicate 3PAP107 | Root tissue (whole-root protein extract) | Non-exuding line | 24 weeks old | Biological replicate 3 | 0.0 | LFQ intensity | PXD011773 |
TkA03G080100 | 8327 | 24 weeks old · Non-exuding line · Biological replicate 4PAP108 | Root tissue (whole-root protein extract) | Non-exuding line | 24 weeks old | Biological replicate 4 | 74778000.0 | LFQ intensity | PXD011773 |
Data source and protein identification
PRIDE PXD011773 · MaxQuant · 108 raw mass-spectrometry files
Archived labels 8d, 12d and 24d correspond to 8-, 12- and 24-week-old plants in the paper. The page shows verified ages; downloads retain source labels and add verified age fields.
Original download fields retain archived labels; added fields provide verified age, tissue, replication and localized group labels.
TkA03G080100
Protein group 8327 · Peptides: 12 · Unique peptides: 9 · Sequence coverage: 23.3%
Mapping evidence: Source mapping category; see original label in download
Source protein IDs: evm.model.utg8195.5|evm.TU.utg8195.5|utg8195|GWHAAAA00019607.:32516-33574,;evm.model.utg6927.6|evm.TU.utg6927.6|utg6927|GWHAAAA00006138.:18410-19177,;evm.model.utg9046.4|evm.TU.utg9046.4|utg9046|GWHAAAA00022945.:22139-22342,;evm.model.utg12940.11|evm.TU.utg12940.11|utg12940|GWHAAAA00008901.:44060-44785,;evm.model.utg1111.9|evm.TU.utg1111.9|utg1111|GWHAAAA00016385.:67307-67612,;evm.model.utg12635.1|evm.TU.utg12635.1|utg12635|GWHAAAA00017869.:10417-11226,;evm.model.utg8854.5|evm.TU.utg8854.5|utg8854|GWHAAAA00006356.:24242-24295,;evm.model.utg4204.4|evm.TU.utg4204.4|utg4204|GWHAAAA00026649.:27713-27761,;evm.model.utg28856.4|evm.TU.utg28856.4|utg28856|GWHAAAA00002739.:9579-10370,;evm.model.utg36638.4|evm.TU.utg36638.4|utg36638|GWHAAAA00024961.:10666-11145,;evm.model.utg29807.2|evm.TU.utg29807.2|utg29807|GWHAAAA00025112.:13336-13338,;evm.model.utg12657.11|evm.TU.utg12657.11|utg12657|GWHAAAA00026820.:75517-75720,;evm.model.utg3502.10|evm.TU.utg3502.10|utg3502|GWHAAAA00005460.:38327-38530,;evm.model.utg27431.6|evm.TU.utg27431.6|utg27431|GWHAAAA00014658.:23705-23920,;evm.model.utg6872.13|evm.TU.utg6872.13|utg6872|GWHAAAA00000023.:68622-68954,;evm.model.utg7697.5|evm.TU.utg7697.5|utg7697|GWHAAAA00013294.:20301-21179,;evm.model.utg19545.7|evm.TU.utg19545.7|utg19545|GWHAAAA00015630.:29363-29803,
Sample design and raw-file catalogue
| Experiment | Sampling age | Material/group | Replicate | Raw files |
|---|---|---|---|---|
| PAP73 | 8 weeks old | Latex-exuding control | Biological replicate 1 | 3 |
| PAP74 | 8 weeks old | Latex-exuding control | Biological replicate 2 | 3 |
| PAP75 | 8 weeks old | Latex-exuding control | Biological replicate 3 | 3 |
| PAP76 | 8 weeks old | Latex-exuding control | Biological replicate 4 | 3 |
| PAP77 | 8 weeks old | Latex-exuding transgenic control | Biological replicate 1 | 3 |
| PAP78 | 8 weeks old | Latex-exuding transgenic control | Biological replicate 2 | 3 |
| PAP79 | 8 weeks old | Latex-exuding transgenic control | Biological replicate 3 | 3 |
| PAP80 | 8 weeks old | Latex-exuding transgenic control | Biological replicate 4 | 3 |
| PAP81 | 8 weeks old | Non-exuding line | Biological replicate 1 | 3 |
| PAP82 | 8 weeks old | Non-exuding line | Biological replicate 2 | 3 |
| PAP83 | 8 weeks old | Non-exuding line | Biological replicate 3 | 3 |
| PAP84 | 8 weeks old | Non-exuding line | Biological replicate 4 | 3 |
| PAP85 | 12 weeks old | Latex-exuding control | Biological replicate 1 | 3 |
| PAP86 | 12 weeks old | Latex-exuding control | Biological replicate 2 | 3 |
| PAP87 | 12 weeks old | Latex-exuding control | Biological replicate 3 | 3 |
| PAP88 | 12 weeks old | Latex-exuding control | Biological replicate 4 | 3 |
| PAP89 | 12 weeks old | Latex-exuding transgenic control | Biological replicate 1 | 3 |
| PAP90 | 12 weeks old | Latex-exuding transgenic control | Biological replicate 2 | 3 |
| PAP91 | 12 weeks old | Latex-exuding transgenic control | Biological replicate 3 | 3 |
| PAP92 | 12 weeks old | Latex-exuding transgenic control | Biological replicate 4 | 3 |
| PAP93 | 12 weeks old | Non-exuding line | Biological replicate 1 | 3 |
| PAP94 | 12 weeks old | Non-exuding line | Biological replicate 2 | 3 |
| PAP95 | 12 weeks old | Non-exuding line | Biological replicate 3 | 3 |
| PAP96 | 12 weeks old | Non-exuding line | Biological replicate 4 | 3 |
| PAP97 | 24 weeks old | Latex-exuding control | Biological replicate 1 | 3 |
| PAP98 | 24 weeks old | Latex-exuding control | Biological replicate 2 | 3 |
| PAP99 | 24 weeks old | Latex-exuding control | Biological replicate 3 | 3 |
| PAP100 | 24 weeks old | Latex-exuding control | Biological replicate 4 | 3 |
| PAP101 | 24 weeks old | Latex-exuding transgenic control | Biological replicate 1 | 3 |
| PAP102 | 24 weeks old | Latex-exuding transgenic control | Biological replicate 2 | 3 |
| PAP103 | 24 weeks old | Latex-exuding transgenic control | Biological replicate 3 | 3 |
| PAP104 | 24 weeks old | Latex-exuding transgenic control | Biological replicate 4 | 3 |
| PAP105 | 24 weeks old | Non-exuding line | Biological replicate 1 | 3 |
| PAP106 | 24 weeks old | Non-exuding line | Biological replicate 2 | 3 |
| PAP107 | 24 weeks old | Non-exuding line | Biological replicate 3 | 3 |
| PAP108 | 24 weeks old | Non-exuding line | Biological replicate 4 | 3 |