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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G243040
Reference: TK1151 Chr: Chr08 Coordinates: 63474831-63478603 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2107 bp · TkA08G243040|TK1151|cDNA

CTCTCTCCTTTCAAACCCATGCGTATATATAGCCCATGGCGGAAGCACCCTCTGTTCTATGTCATTTGATTCAATCAGAGCCTCTCAGATCATATCCGAACTCCTTTCAGATAACAACCCCACGTTTCATCATCACCCCCTTCCGTTTTTTGTCTGCATTTGGATATACATATATATAATATTGTTATCGGATAAATGGAAGACGATTTTGATGTTCCGACTGCCGAAAAATTCAACGACGGCGACGAAGAGGACGTAAT...

CDS

Download CDS FASTA

1746 bp · TkA08G243040|TK1151|CDS

ATGGAAGACGATTTTGATGTTCCGACTGCCGAAAAATTCAACGACGGCGACGAAGAGGACGTAATCAGCGACGACATGGACTTGCCGGATGGTGCATCAGTCGGAAAAGTTGGAGAAGAGAAGGAGATTGGAAAAGGTGGGTTGAAGAAGAAAATCCTTAAGGAAGGTGATGGCTGGGACACTCCCATTAATGGCGATGAAGTTGAAGTTCACTATGTGGGAAGTTTACTTGACGGCACTCGATTTGATTCAAGCTTCGA...

Protein

Download Protein FASTA

581 aa · TkA08G243040|TK1151|PROTEIN

MEDDFDVPTAEKFNDGDEEDVISDDMDLPDGASVGKVGEEKEIGKGGLKKKILKEGDGWDTPINGDEVEVHYVGSLLDGTRFDSSFDREMPFKFKLGLGHVIQGWDDGITTMKKGEKSLFTIPPTLAYGESGSPPTIPPNATLQFEIELLSWTKVKDICKDGGILKTIVTEGQNWQSPKDPDEVLVKYEARLEDGSLVSKTNEVEFSVKDGCFCPALSKAVKTMKKGEKALFTVKPQYAFGEKGWDPAGGDECVAVLPNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G243040
TK1151 IDTkA08G243040
OH-1004 IDLXL04_033234
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G243040
LocationChr08:63474831-63478603 (-)
DescriptionSimilar to FKBP65: Peptidyl-prolyl cis-trans isomerase FKBP65
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g48570 PPIases accelerate the folding of proteins.
Involvement of Arabidopsis ROF2 (FKBP65) in thermotolerance.2010 · DOI: 10.1007/s11103-009-9561-3
Peptidyl-prolyl cis-trans isomerase ROF2 modulates intracellular pH homeostasis in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.04921.x
Characterization of three Arabidopsis thaliana immunophilin genes involved in the plant defense response against Pseudomonas syringae.2014 · DOI: 10.1016/j.gene.2014.01.029
At3g25230 PPIases accelerate the folding of proteins.
Arabidopsis immunophilins ROF1 (AtFKBP62) and ROF2 (AtFKBP65) exhibit tissue specificity, are heat-stress induced, and bind HSP90.2007 · DOI: 10.1007/s11103-006-9085-z
Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs.2009 · DOI: 10.1111/j.1365-313x.2009.03878.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009408 response to heat Biological Process
GO:0009611 response to wounding Biological Process
GO:0009644 response to high light intensity Biological Process
GO:0009845 seed germination Biological Process
GO:0031111 negative regulation of microtubule polymerization or depolymerization Biological Process
GO:0070370 cellular heat acclimation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT3G25230
ath:AT5G48570
bta:508535
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.617
Rank 1 · TkA08G243040 · TK1151
Nucleus0.414
Rank 2 · TkA08G243040 · TK1151
Mitochondrion0.097
Rank 3 · TkA08G243040 · TK1151
Cell membrane0.073
Rank 4 · TkA08G243040 · TK1151
Endoplasmic reticulum0.056
Rank 5 · TkA08G243040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23322PPIase_AIP49-125 aa
PF00254FKBP_C61-150 aa
PF00254FKBP_C176-268 aa
PF23322PPIase_AIP218-237 aa
PF23322PPIase_AIP284-359 aa
PF00254FKBP_C295-388 aa
PF06605Prophage_tail383-456 aa
PF25575TPR_BSK1_C404-436 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G243040PF23322PPIase_AIP491259.6e-0626.7
TkA08G243040PF00254FKBP_C611505.3e-79261.4
TkA08G243040PF00254FKBP_C1762685.3e-79261.4
TkA08G243040PF23322PPIase_AIP2182379.6e-0626.7
TkA08G243040PF23322PPIase_AIP2843599.6e-0626.7
TkA08G243040PF00254FKBP_C2953885.3e-79261.4
TkA08G243040PF06605Prophage_tail3834560.4411.3
TkA08G243040PF25575TPR_BSK1_C4044360.4811.0
TkA08G243040PF07719TPR_24144363.7e-0833.6
TkA08G243040PF13432TPR_164144350.0007920.5
TkA08G243040PF00515TPR_14154361.8e-1247.2
TkA08G243040PF13181TPR_84154363.4e-0730.6
TkA08G243040PF13414TPR_114154361.9e-0524.9
TkA08G243040PF13424TPR_124154360.002318.8
TkA08G243040PF13428TPR_144174360.114.0
TkA08G243040PF23914TPR_CcmH_CycH4184420.04714.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJL3Arabidopsis thalianasp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP6564.900%Swiss-ProtHigh
Q38931Arabidopsis thalianasp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP6265.600%Swiss-ProtHigh

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