RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G039570
Reference: TK1151 Chr: Chr08 Coordinates: 10040241-10055242 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2597 bp · TkA08G039570|TK1151|cDNA

GGAAAAAAAAAAATCCCTTTTATTGCTTTCTATATATACGGTCCAGTTCATCTTACGGGTTCAGATTTTAGTTACAAAAGGTGTATTCCGCCCCTACTCTCTCTCTCTCTCTCTCTCACACACACACATACACACACAAATATTCTCTCTATCTCTCTATATATCGTAGATAGTATGTGGAAGCTGAAAATAGCAGAAGGTAGTGATGATGAGTGGCTGACCACCACCAACAACCACGTCGGCCGTCAGCACTGGCAGTT...

CDS

Download CDS FASTA

2451 bp · TkA08G039570|TK1151|CDS

GGAAAAAAAAAAATCCCTTTTATTGCTTTCTATATATACGGTCCAGTTCATCTTACGGGTTCAGATTTTAGTTACAAAAGGTGTATTCCGCCCCTACTCTCTCTCTCTCTCTCTCTCACACACACACATACACACACAAATATTCTCTCTATCTCTCTATATATCGTAGATAGTATGTGGAAGCTGAAAATAGCAGAAGGTAGTGATGATGAGTGGCTGACCACCACCAACAACCACGTCGGCCGTCAGCACTGGCAGTT...

Protein

Download Protein FASTA

816 aa · TkA08G039570|TK1151|PROTEIN

GKKKIPFIAFYIYGPVHLTGSDFSYKRCIPPLLSLSLSLTHTHTHTNILSISLYIVDSMWKLKIAEGSDDEWLTTTNNHVGRQHWQFDPDAGTEEERAQIEKIRLNFKLNRFQFKQSADLLMRTQLRKENPINKIPDAIKLNETEEVTNDAVTTTLKRAISFYSTIQAHDGHWPAESAGPLFFLPPLVIALYVTGAMNDILTPAHQLEIKRYIYNHQNEDGGWGLHIEGHSTIFGSVLSYITLRLLGEEADSVAEDMALV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G039570
TK1151 IDTkA08G039570
OH-1004 IDLXL04_029392
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)62.600
Protein coverage (%)TK1151 92.525 / OH-1004 99.472
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G039570
LocationChr08:10040241-10055242 (+)
DescriptionSimilar to OSCPNY2: Beta-amyrin synthase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029392 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002238 response to molecule of fungal origin Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0010038 response to metal ion Biological Process
GO:0016104 triterpenoid biosynthetic process Biological Process
GO:0019745 pentacyclic triterpenoid biosynthetic process Biological Process
GO:0042542 response to hydrogen peroxide Biological Process
GO:0071731 response to nitric oxide Biological Process
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0016866 intramolecular transferase activity Molecular Function
GO:0042300 beta-amyrin synthase activity Molecular Function
KEGG gene cross-reference
ag:BAA33461
ag:BAB83088
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.323
Rank 1 · TkA08G039570 · TK1151
Endoplasmic reticulum0.199
Rank 2 · TkA08G039570 · TK1151
Peroxisome0.160
Rank 3 · TkA08G039570 · TK1151
Cytoplasm0.151
Rank 4 · TkA08G039570 · TK1151
Cell membrane0.069
Rank 5 · TkA08G039570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13243SQHop_cyclase_C151-228 aa
PF13249SQHop_cyclase_N157-415 aa
PF00432Prenyltrans197-255 aa
PF13243SQHop_cyclase_C475-811 aa
PF00432Prenyltrans480-532 aa
PF00432Prenyltrans556-722 aa
PF13249SQHop_cyclase_N566-592 aa
PF07678TED_complement567-604 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G039570PF13243SQHop_cyclase_C1512281.2e-59202.7
TkA08G039570PF13249SQHop_cyclase_N1574159.4e-45153.7
TkA08G039570PF00432Prenyltrans1972552e-0628.2
TkA08G039570PF13243SQHop_cyclase_C4758111.2e-59202.7
TkA08G039570PF00432Prenyltrans4805322e-0628.2
TkA08G039570PF00432Prenyltrans5567222e-0628.2
TkA08G039570PF13249SQHop_cyclase_N5665929.4e-45153.7
TkA08G039570PF07678TED_complement5676041.5e-0525.0
TkA08G039570PF09492Pec_lyase5736760.003117.6
TkA08G039570PF13249SQHop_cyclase_N6416709.4e-45153.7
TkA08G039570PF07678TED_complement6427501.5e-0525.0
TkA08G039570PF13249SQHop_cyclase_N6497179.4e-45153.7
TkA08G039570PF00432Prenyltrans6787792e-0628.2
TkA08G039570PF09492Pec_lyase6957270.003117.6
TkA08G039570PF07678TED_complement7527801.5e-0525.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser