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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G361050
Reference: TK1151 Chr: Chr07 Coordinates: 90462247-90464375 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1819 bp · TkA07G361050|TK1151|cDNA

CAAAGCTGCCCTCTGAACACCCATAAATGATAAACCTCCATCCCTACACGTGGACTCATACGTGTCTCTCTCCATAAAACCTTCCTTGCTTCACCACTGATGATGAACAAAAACCCCTCTCTCTTTCTCACTCTCAAATACTCGAACGAATTCACACATTCCTCACATACATGAAGACATTCATAGCTATACTGCCCCTTAAATATCATTGAACTTCGTTAATCTCGATTCCAGCGTCTTTTACGATTATCTTTTCTCTC...

CDS

Download CDS FASTA

1062 bp · TkA07G361050|TK1151|CDS

ATGTCGACCATGAAAGGCGATGAAGTAGAGGTGGTCGAAGGTGGGAGGGTTACTGCCGACTGGAACGACATTCCGATGGAGCTTTTGTTGAGGATTGTGGGTTTATTAGACGATCGGACGGTCATCGTCGCTTCTACTGTTTGTACCGGATGGAGATACGCTGTTTGTTCGGGACTTTCTCATATTTCATTCTCTTGGTGCAAAAACAACATGAACAACTTGGTCCTTTCTTTCGCTCCCAAATTCAAAAATCTGAGGGG...

Protein

Download Protein FASTA

353 aa · TkA07G361050|TK1151|PROTEIN

MSTMKGDEVEVVEGGRVTADWNDIPMELLLRIVGLLDDRTVIVASTVCTGWRYAVCSGLSHISFSWCKNNMNNLVLSFAPKFKNLRGLILRQDKPQLVDYAVETIANNCHELQEIDLSKSFKLTDRSLYALAHGCPNLIKLNISGCSAFSDTALAYLTGYCRKLKTLNLCGCVKAASDKALKAIGYNCGQLQSLNLGWCEEVTDAGVTSLANGCHGLRALDLCGCVLITDESVIALARNCLHLRSLGLYYCQNITDKAIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G361050
TK1151 IDTkA07G361050
OH-1004 IDLXL04_029940
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G361050
LocationChr07:90462247-90464375 (+)
DescriptionSimilar to SKP2A: F-box protein SKP2A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21410 Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors).
The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis.2006 · DOI: 10.1105/tpc.105.039651
SKP2A protein, an F-box that regulates cell division, is degraded via the ubiquitin pathway.2008 · DOI: 10.4161/psb.3.10.5888
The Arabidopsis cell cycle F-box protein SKP2A binds to auxin.2010 · DOI: 10.1105/tpc.110.078972
At1g77000 Component of SCF(SKP2B) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of the cyclin-dependent kinase inhibitor KRP1.
Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases.2008 · DOI: 10.1111/j.1365-313x.2007.03370.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029940 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0010286 heat acclimation Biological Process
GO:0010311 lateral root formation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0051603 proteolysis involved in protein catabolic process Biological Process
GO:0051781 positive regulation of cell division Biological Process
GO:0071365 cellular response to auxin stimulus Biological Process
GO:1901332 negative regulation of lateral root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G21410
ath:AT1G77000
bta:511007
hsa:84961
mmu:72194
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.474
Rank 1 · TkA07G361050 · TK1151
Cytoplasm0.280
Rank 2 · TkA07G361050 · TK1151
Mitochondrion0.109
Rank 3 · TkA07G361050 · TK1151
Cell membrane0.064
Rank 4 · TkA07G361050 · TK1151
Plastid0.041
Rank 5 · TkA07G361050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like21-57 aa
PF00646F-box21-57 aa
PF15966F-box_422-68 aa
PF29594LRR_SKP255-132 aa
PF24758LRR_At5g5637056-120 aa
PF00560LRR_159-69 aa
PF13306LRR_563-65 aa
PF12799LRR_469-90 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G361050PF12937F-box-like21573e-0627.6
TkA07G361050PF00646F-box21574.4e-0523.9
TkA07G361050PF15966F-box_422680.09813.3
TkA07G361050PF29594LRR_SKP2551321.3e-2384.3
TkA07G361050PF24758LRR_At5g56370561205.6e-0626.9
TkA07G361050PF00560LRR_159690.01815.7
TkA07G361050PF13306LRR_563650.2512.0
TkA07G361050PF12799LRR_469902.1e-0628.5
TkA07G361050PF24758LRR_At5g56370831725.6e-0626.9
TkA07G361050PF25372LRR_FBXL15951324.6e-1865.6
TkA07G361050PF25372LRR_FBXL15972714.6e-1865.6
TkA07G361050PF24048LRR_NXF1-5971590.01915.3
TkA07G361050PF29594LRR_SKP21022651.3e-2384.3
TkA07G361050PF13306LRR_51071960.2512.0
TkA07G361050PF13516LRR_61091325.4e-1348.6
TkA07G361050PF12799LRR_41111492.1e-0628.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LPL4Arabidopsis thalianasp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A71.900%Swiss-ProtHigh
O49286Arabidopsis thalianasp|O49286|SKP2B_ARATH F-box protein SKP2B69.000%Swiss-ProtHigh

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