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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G141670
Reference: TK1151 Chr: Chr07 Coordinates: 36571276-36578351 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3054 bp · TkA07G141670|TK1151|cDNA

CAAAAGTCCAGTACAAAGCCAAGCGGCCCATATTGAAGGCCCACATCGCCTTATCGGCTGACGGATAAAACCAAACTGGAAAGTGGAAATATCTCTACGATAATCTTACCCTGCGACTCTCTATACAGGAGTTCAATTCAAATTCTCTTCCACAATCTTACCCGGTAGTAATTTATACACGAGTTGAGTTCACTTTAAGTATATTTTATCCATTTGCTGCTCAGAGGAACTTCCTCTCCAGGTTCTATTTTATTAGGTCT...

CDS

Download CDS FASTA

2460 bp · TkA07G141670|TK1151|CDS

ATGGCAATGGCTGCTTTCAGTGGTATATCACATTGCCATCACAGGCTCTGGTGGCAACCCAACACCTCAAAACTTCCTGTTTCTTGCTCTATGCCTCCTCCTACATTCACAGGTACAAGTCATGGATCTAAAACGGGACCTAGACGTTCCGGAAGATTTGAAGGGGCTGGAAAGAGCATGGAAGATTCCGTGAAGCGCAAAATGGAGAAATTTTATGAAGGGTCAAACGGTCCACCTCTCCGTGTTCTTCCAATTGGTGG...

Protein

Download Protein FASTA

819 aa · TkA07G141670|TK1151|PROTEIN

MAMAAFSGISHCHHRLWWQPNTSKLPVSCSMPPPTFTGTSHGSKTGPRRSGRFEGAGKSMEDSVKRKMEKFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNFDRYILIDAGVMFPDYEDLGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSRTPIFASTFTMELIKKRLKESGIFVPSRLKAFKTKRRFQAGPFEIEPIRVTHSIPDCSGLVLRCSDGVILHTGDWKIDESPLDGQVFDREGLEQLSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G141670
TK1151 IDTkA07G141670
OH-1004 IDLXL04_028313
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 99.756 / OH-1004 93.537
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G141670
LocationChr07:36571276-36578351 (+)
DescriptionSimilar to RNJ: Ribonuclease J
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g63420 Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028313 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009942 longitudinal axis specification Biological Process
GO:0060918 auxin transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT5G63420
cgb:cg2160
cgl:Cgl1970
msb:LJ00_13360
msg:MSMEI_2620
msm:MSMEG_2685
smel:SM2011_c01929
tth:TT_C0775
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.857
Rank 1 · TkA07G141670 · TK1151
Mitochondrion0.093
Rank 2 · TkA07G141670 · TK1151
Nucleus0.065
Rank 3 · TkA07G141670 · TK1151
Cytoplasm0.027
Rank 4 · TkA07G141670 · TK1151
Cell membrane0.021
Rank 5 · TkA07G141670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00753Lactamase_B94-237 aa
PF23023Anti-Pycsar_Apyc196-245 aa
PF12706Lactamase_B_2103-239 aa
PF16661Lactamase_B_6126-176 aa
PF07521RMMBL138-153 aa
PF22505RNase_J_b_CASP297-422 aa
PF07521RMMBL376-388 aa
PF07521RMMBL431-483 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G141670PF00753Lactamase_B942372.3e-0731.7
TkA07G141670PF23023Anti-Pycsar_Apyc1962453.2e-0524.5
TkA07G141670PF12706Lactamase_B_21032391.6e-0938.3
TkA07G141670PF16661Lactamase_B_61261760.03414.2
TkA07G141670PF07521RMMBL1381534.5e-0936.9
TkA07G141670PF22505RNase_J_b_CASP2974226.4e-29101.0
TkA07G141670PF07521RMMBL3763884.5e-0936.9
TkA07G141670PF07521RMMBL4314834.5e-0936.9
TkA07G141670PF12706Lactamase_B_24394641.6e-0938.3
TkA07G141670PF00249Myb_DNA-binding4674780.1313.1
TkA07G141670PF17770RNase_J_C5346402.8e-2589.9
TkA07G141670PF16282SANT_DAMP1_like7187560.1912.7
TkA07G141670PF13837Myb_DNA-bind_47258093.2e-2279.5
TkA07G141670PF00249Myb_DNA-binding7257820.1313.1
TkA07G141670PF10545MADF_DNA_bdg7508070.01416.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84W56Arabidopsis thalianasp|Q84W56|RNJ_ARATH Ribonuclease J67.900%Swiss-ProtHigh

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