RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G135730
Reference: TK1151 Chr: Chr07 Coordinates: 35181305-35184537 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1893 bp · TkA07G135730|TK1151|cDNA

TTTCTACAAAACCCTTTCCCTCACTCACACCCATTCTCTCTCACGCACTAACAACACCAGCTGTGTGCCTATCCCGCGTTGTTTCATTGCCTTTTCGCCCAACAAAATCTCATTCAGACGAATGTGTTGAATCTGCTAGCCATTTTGCCCCAAATTATCATGTGCCAAACATCACAAATTTTCCAACATCTTTGTTAGGGTTTATATGTTCATCACAACGATGCCTGACCTGGGCAACCTTGTAAGCACGTCTTCTCTTC...

CDS

Download CDS FASTA

1440 bp · TkA07G135730|TK1151|CDS

ATGTTCATCACAACGATGCCTGACCTGGGCAACCTTGTAAGCACGTCTTCTCTTCCCCTTACTCGTTGTTCAAATTCAAGATCAGGTTCCACGGGAAACCTCGATTTGGTAGACCCAAAGTATGCTAAAGAATCGGAAACCCCTCTAATAATGCAAGATGAAAGTCAAAAAGAGCGGTCTGTTAAGATCAGTAAATCGGTGGAATCGAAGAGCTTGAATGATTATTGGAGCGATTGGGTTGCGAAGAATGTCGACTTGGG...

Protein

Download Protein FASTA

479 aa · TkA07G135730|TK1151|PROTEIN

MFITTMPDLGNLVSTSSLPLTRCSNSRSGSTGNLDLVDPKYAKESETPLIMQDESQKERSVKISKSVESKSLNDYWSDWVAKNVDLGVPESKLFLPFLLGSPKLAECLVCESVIYPGEEASCAVRDCKASYHLTCARDWLGLSPSSKAFKCPQHACFLCKKKIHIWRCSRCHLASHDKCAAFSEHVMDSKDQKICWRHYWPPLKPAVPTNSMEELFCRLPLPYTVDEFKIDLLLKDTMENKLEPPPYVHIRRNIYLVKKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G135730
TK1151 IDTkA07G135730
OH-1004 IDLXL04_028258
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G135730
LocationChr07:35181305-35184537 (+)
DescriptionSimilar to ASHR3: Histone-lysine N-methyltransferase ASHR3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30860 Histone methyltransferase (By similarity). No verified direct reference in this release
At2g44150 Histone methyltransferase. No verified direct reference in this release
At3g59960 Histone methyltransferase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028258 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0001763 morphogenesis of a branching structure Biological Process
GO:0006298 mismatch repair Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006368 transcription elongation by RNA polymerase II Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0010508 positive regulation of autophagy Biological Process
GO:0010569 regulation of double-strand break repair via homologous recombination Biological Process
GO:0010793 regulation of mRNA export from nucleus Biological Process
KEGG gene cross-reference
ath:AT2G44150
ath:AT4G30860
mmu:107823
mmu:235626
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.941
Rank 1 · TkA07G135730 · TK1151
Cytoplasm0.112
Rank 2 · TkA07G135730 · TK1151
Cell membrane0.030
Rank 3 · TkA07G135730 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA07G135730 · TK1151
Mitochondrion0.014
Rank 5 · TkA07G135730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22908PHD_NSD105-154 aa
PF13639zf-RING_2106-159 aa
PF22908PHD_NSD153-198 aa
PF13639zf-RING_2156-180 aa
PF00856SET190-190 aa
PF22908PHD_NSD261-283 aa
PF13639zf-RING_2270-297 aa
PF17907AWS272-308 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G135730PF22908PHD_NSD1051548e-0626.8
TkA07G135730PF13639zf-RING_21061590.02915.3
TkA07G135730PF22908PHD_NSD1531988e-0626.8
TkA07G135730PF13639zf-RING_21561800.02915.3
TkA07G135730PF00856SET1901902.1e-2693.1
TkA07G135730PF22908PHD_NSD2612838e-0626.8
TkA07G135730PF13639zf-RING_22702970.02915.3
TkA07G135730PF17907AWS2723080.03414.9
TkA07G135730PF00856SET3214262.1e-2693.1
TkA07G135730PF08666SAF3253350.2512.5
TkA07G135730PF08666SAF4084250.2512.5
TkA07G135730PF17907AWS4374440.03414.9
TkA07G135730PF22908PHD_NSD4384468e-0626.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q949T8Arabidopsis thalianasp|Q949T8|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR364.000%Swiss-ProtHigh
Q945S8Arabidopsis thalianasp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH354.500%Swiss-ProtLow
Q9M1X9Arabidopsis thalianasp|Q9M1X9|ASHH4_ARATH Putative histone-lysine N-methyltransferase ASHH453.400%Swiss-ProtLow

JBrowse

View in Genome Browser