TkA06G419870 | RubberDandelionOmics

Gene overview

TkA06G419870

Reference: TK1151 Chr: Chr06 Coordinates: 103943062-103962151 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1722 bp · TkA06G419870|TK1151|cDNA

GGGAATTATTAAAATTCTCTTTTCCTTCATGTGTATTATTATAAATACAAGTCATATATACATATGTACACTAAATAAGAGAAGCTCGTAGTTTTGTTCTCTTTCTCTTATAATTGTCATCGTCATTTGGTGAGTTACCAAAACAACCATTGAGTTATGTACTCAAAAAGATGGGTAAAAGATATGTTTAGCTTTTTTGTTCTCTCAGTCTGTTTAGTTTGGGTTCCAAATTGTGTTAGAGTCCATTCATCATCTCCGGC...

CDS

Download CDS FASTA

1566 bp · TkA06G419870|TK1151|CDS

ATGTACTCAAAAAGATGGGTAAAAGATATGTTTAGCTTTTTTGTTCTCTCAGTCTGTTTAGTTTGGGTTCCAAATTGTGTTAGAGTCCATTCATCATCTCCGGCAGAAGACTCGCAACCTTACAGGACTGGTTTTCATTTCCAACCTCCTAAAAACTGGATCAACGGTCCCATGTACTTCAATGGAGTTTACCATCTGTTCTACCAATATAACCCTTACGGTCCACTATGGGGCAACATTTCATGGGGTCATTCCATATC...

Protein

Download Protein FASTA

522 aa · TkA06G419870|TK1151|PROTEIN

MYSKRWVKDMFSFFVLSVCLVWVPNCVRVHSSSPAEDSQPYRTGFHFQPPKNWINGPMYFNGVYHLFYQYNPYGPLWGNISWGHSISYDLVNWFLLEPALRPKESYDINGCLSGSATILPGPQPIILYTGQDLNNSQVQNLAVPKNLSDPLLKEWKKWSGNPLLTPIGDIKPGQFRDPSTAWIGPDKKWRIVIGGEIDGNGTALLYHSVNGTSWTRSQNPLHFSSKTGMWECPDFYPVSVGNKKGLDTSVEGNKIIHVLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G419870`
TK1151 ID	TkA06G419870
OH-1004 ID	LXL04_028831
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	63.400
Protein coverage (%)	TK1151 83.525 / OH-1004 76.585 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G419870

Location Chr06:103943062-103962151 (-)

Description Similar to CWINV1: Beta-fructofuranosidase, insoluble isoenzyme CWINV1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13790`	Beta-fructofuranosidase that can use sucrose and 1-kestose, and, to a lower extent, neokestose and levan, as substrates, but not inuline.	Unraveling the difference between invertases and fructan exohydrolases: a single amino acid (Asp-239) substitution transforms Arabidopsis cell wall invertase1 into a fructan 1-exohydrolase.2007 · DOI: 10.1104/pp.107.105049
`At1g55120`	6-fructan exohydrolase that can use phlein, levan, neokestose, levanbiose, 6-kestose, and 1-kestose as substrates.	No verified direct reference in this release
`At3g13784`	Beta-fructofuranosidase, insoluble isoenzyme CWINV5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028831 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004564 beta-fructofuranosidase activity Molecular Function

GO:0033949 fructan beta-(2,6)-fructosidase activity Molecular Function

KEGG gene cross-reference

ag:CAD48404

ath:AT1G55120

ath:AT3G13784

ath:AT3G13790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.397

Rank 1 · TkA06G419870 · TK1151

Endoplasmic reticulum0.164

Rank 2 · TkA06G419870 · TK1151

Cell membrane0.145

Rank 3 · TkA06G419870 · TK1151

Extracellular0.138

Rank 4 · TkA06G419870 · TK1151

Cytoplasm0.118

Rank 5 · TkA06G419870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00251Glyco_hydro_32N46-359 aa

PF08244Glyco_hydro_32C362-455 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G419870	`PF00251`	Glyco_hydro_32N	46	359	3e-91	306.9
TkA06G419870	`PF08244`	Glyco_hydro_32C	362	455	0.0001	23.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43866`	Arabidopsis thaliana	sp\|Q43866\|INV1_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV1	51.900%	Swiss-Prot	High
`Q67XZ3`	Arabidopsis thaliana	sp\|Q67XZ3\|INV3_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV3	50.600%	Swiss-Prot	High
`Q9LIB9`	Arabidopsis thaliana	sp\|Q9LIB9\|INV5_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV5	49.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card