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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G026030
Reference: TK1151 Chr: Chr06 Coordinates: 7028354-7029448 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1065 bp · TkA06G026030|TK1151|cDNA

ATGGGGTCTTTTGATGTTGATAGTCCGACAACATGGGTGCCTTATATAAACAATCAAGATTGTTCGCAAAAGATTTGCAACTTATACTGCCCCCAATGGTGTAACTACGTCGTCCTCCCATCTCCTCCACCGCCTGTAGGGTTTTCCGACAATGACACAGGCGGTGCCAGTCTCTCTCCTCTTGTGATCGTGATCATTGGTGTTTTTGGGAGTGTGTGCCTTCTGATTAGTTACTATGTTATAATCTCCCGACTTTGTAT...

CDS

Download CDS FASTA

1065 bp · TkA06G026030|TK1151|CDS

ATGGGGTCTTTTGATGTTGATAGTCCGACAACATGGGTGCCTTATATAAACAATCAAGATTGTTCGCAAAAGATTTGCAACTTATACTGCCCCCAATGGTGTAACTACGTCGTCCTCCCATCTCCTCCACCGCCTGTAGGGTTTTCCGACAATGACACAGGCGGTGCCAGTCTCTCTCCTCTTGTGATCGTGATCATTGGTGTTTTTGGGAGTGTGTGCCTTCTGATTAGTTACTATGTTATAATCTCCCGACTTTGTAT...

Protein

Download Protein FASTA

354 aa · TkA06G026030|TK1151|PROTEIN

MGSFDVDSPTTWVPYINNQDCSQKICNLYCPQWCNYVVLPSPPPPVGFSDNDTGGASLSPLVIVIIGVFGSVCLLISYYVIISRLCIVNNDSSEVPLRRRGGQDQETHELEIVDDHDHNMIEDPLNFGPWNDPGKGLDEGMISSIKVCKYKKGDGFISGTDCTVCLGEFQEDESLRLLPKCSHAFHVYCIDTWLTSHSNCPLCRANVTCVNSNTKSPPPPPPPPPPPPPPPPQLEMVVSRRVESDMGDGDAVIEIREEEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G026030
TK1151 IDTkA06G026030
OH-1004 IDLXL04_026136
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G026030
LocationChr06:7028354-7029448 (+)
DescriptionSimilar to Os04g0590900: E3 ubiquitin-protein ligase Os04g0590900
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g17600 RING-H2 finger protein ATL52. No verified direct reference in this release
At4g17905 Putative RING-H2 finger protein ATL53. No verified direct reference in this release
At3g03550 RING-H2 finger protein ATL51. No verified direct reference in this release
At1g72220 RING-H2 finger protein ATL54. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0590900 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026136 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G72220
ath:AT3G03550
ath:AT4G17905
ath:AT5G17600
dosa:Os04g0590900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.462
Rank 1 · TkA06G026030 · TK1151
Nucleus0.259
Rank 2 · TkA06G026030 · TK1151
Cytoplasm0.223
Rank 3 · TkA06G026030 · TK1151
Endoplasmic reticulum0.142
Rank 4 · TkA06G026030 · TK1151
Lysosome / Vacuole0.093
Rank 5 · TkA06G026030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08746zf-RING-like19-27 aa
PF13639zf-RING_222-29 aa
PF13920zf-C3HC4_3160-208 aa
PF13639zf-RING_2161-204 aa
PF17123zf-RING_11161-190 aa
PF17120zf-RING_16161-201 aa
PF13923zf-C3HC4_2162-203 aa
PF00097zf-C3HC4162-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G026030PF08746zf-RING-like19270.06214.1
TkA06G026030PF13639zf-RING_222296.6e-1452.6
TkA06G026030PF13920zf-C3HC4_31602080.03914.5
TkA06G026030PF13639zf-RING_21612046.6e-1452.6
TkA06G026030PF17123zf-RING_111611906.7e-1142.4
TkA06G026030PF17120zf-RING_161612010.5410.6
TkA06G026030PF13923zf-C3HC4_21622031e-0732.3
TkA06G026030PF00097zf-C3HC41622033.2e-0627.6
TkA06G026030PF13445zf-RING_UBOX1622010.0414.6
TkA06G026030PF12906RINGv1622030.2312.3
TkA06G026030PF12861zf-ANAPC111692084.6e-0627.3
TkA06G026030PF12678zf-rbx11712043.4e-1040.7
TkA06G026030PF08746zf-RING-like1802030.06214.1
TkA06G026030PF15912VIR_N2122360.1212.5
TkA06G026030PF05308Mito_fiss_reg2122340.4411.4
TkA06G026030PF05308Mito_fiss_reg2802910.4411.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LF64Arabidopsis thalianasp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL5246.400%Swiss-ProtMedium
P0C041Arabidopsis thalianasp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL5335.600%Swiss-ProtMedium
Q9SRQ8Arabidopsis thalianasp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL5142.700%Swiss-ProtMedium
Q8LFY8Arabidopsis thalianasp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL5435.200%Swiss-ProtMedium
Q7XLY8Oryza sativa subsp. japonicasp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g059090038.900%Swiss-ProtMedium

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