TkA05G389090 | RubberDandelionOmics

Gene overview

TkA05G389090

Reference: TK1151 Chr: Chr05 Coordinates: 96714935-96715546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

576 bp · TkA05G389090|TK1151|cDNA

ATGGCAACGTTTGATGAAGTTTCAGCTATTGAGCTCATCCGACAACACCTTCTCGACGAAGAATATGATACCTCCCCTCCCGAATCCAACTCTGATCATCTATCGGTTCCTGATTATCTCCATTCCGATCAACAACCCCCCATCCTTGATTTCACGGTACCCCAGCCTAGACCTAGAAAACCAAACTTGAAAAAAAAGGAGAACTCAGAGGAGTTTAGAGTGAATTATAGAGGAGTAAGGCGGAGGCCGTGGGGGAAGTA...

CDS

Download CDS FASTA

576 bp · TkA05G389090|TK1151|CDS

ATGGCAACGTTTGATGAAGTTTCAGCTATTGAGCTCATCCGACAACACCTTCTCGACGAAGAATATGATACCTCCCCTCCCGAATCCAACTCTGATCATCTATCGGTTCCTGATTATCTCCATTCCGATCAACAACCCCCCATCCTTGATTTCACGGTACCCCAGCCTAGACCTAGAAAACCAAACTTGAAAAAAAAGGAGAACTCAGAGGAGTTTAGAGTGAATTATAGAGGAGTAAGGCGGAGGCCGTGGGGGAAGTA...

Protein

Download Protein FASTA

191 aa · TkA05G389090|TK1151|PROTEIN

MATFDEVSAIELIRQHLLDEEYDTSPPESNSDHLSVPDYLHSDQQPPILDFTVPQPRPRKPNLKKKENSEEFRVNYRGVRRRPWGKYAAEIRDPKRRGSRIWLGTFSTSIEAAKPYDKAAFELRGRKAILNFPLEIEEGRKRCRAEEATVVMVKKEKTTDVPMVPSSWVAVWEENVCGSFDVPPLAHEVVI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G389090`
TK1151 ID	TkA05G389090
OH-1004 ID	LXL04_002096
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	54.500
Protein coverage (%)	TK1151 93.194 / OH-1004 36.514 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G389090

Location Chr05:96714935-96715546 (-)

Description Similar to HPPR: Hydroxyphenylpyruvate reductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61600`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g51190`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g47230`	Acts as a transcriptional activator.	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression.2000 · DOI: 10.1105/tpc.12.3.393

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002096 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009853 photorespiration Biological Process

GO:0009854 oxidative photosynthetic carbon pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008465 hydroxypyruvate reductase (NADH) activity Molecular Function

GO:0008720 D-lactate dehydrogenase (NAD+) activity Molecular Function

GO:0016618 hydroxypyruvate reductase [NAD(P)H] activity Molecular Function

GO:0030267 glyoxylate reductase (NADPH) activity Molecular Function

GO:0047964 glyoxylate reductase (NADH) activity Molecular Function

GO:0047995 (2R)-hydroxyphenylpyruvate reductase [NAD(P)H] activity Molecular Function

KEGG gene cross-reference

ag:CAD47810

ath:AT1G12550

ath:AT1G79870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.969

Rank 1 · TkA05G389090 · TK1151

Cytoplasm0.088

Rank 2 · TkA05G389090 · TK1151

Cell membrane0.025

Rank 3 · TkA05G389090 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA05G389090 · TK1151

Plastid0.015

Rank 5 · TkA05G389090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP275-125 aa

PF00847AP2167-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G389090	`PF00847`	AP2	75	125	1e-13	52.1
TkA05G389090	`PF00847`	AP2	167	175	1e-13	52.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKG1`	Arabidopsis thaliana	sp\|Q9FKG1\|EF104_ARATH Ethylene-responsive transcription factor ERF104	41.200%	Swiss-Prot	Medium
`Q8VY90`	Arabidopsis thaliana	sp\|Q8VY90\|EF105_ARATH Ethylene-responsive transcription factor ERF105	41.000%	Swiss-Prot	Medium
`O80341`	Arabidopsis thaliana	sp\|O80341\|EF102_ARATH Ethylene-responsive transcription factor 5	50.700%	Swiss-Prot	Medium

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