TkA04G233160 | RubberDandelionOmics

Gene overview

TkA04G233160

Reference: TK1151 Chr: Chr04 Coordinates: 59190619-59191965 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

711 bp · TkA04G233160|TK1151|cDNA

ATGGCTAAATTTTGGGTTGTTACATCCTGCTCTTCCGGATCTAAACTGCTTCATCATTCTCCATTTCCCTCAAACTTACCCAACTCCCTCATCTTCGTCTCCTCCAGTTCCAAGTTTGCAGCGATCCCACAGCTTCAATTCTGCTTGAGATCGCCAGTCTCTCGCTCTTCGTCTTTGGATTCTTCCCCATTAAATCAGCTCTCTCCGGTGTCAGTGGACCAGAGAGTTTCCGGCCTTCCTCACGCGATTCGGTTGAGGAT...

CDS

Download CDS FASTA

711 bp · TkA04G233160|TK1151|CDS

ATGGCTAAATTTTGGGTTGTTACATCCTGCTCTTCCGGATCTAAACTGCTTCATCATTCTCCATTTCCCTCAAACTTACCCAACTCCCTCATCTTCGTCTCCTCCAGTTCCAAGTTTGCAGCGATCCCACAGCTTCAATTCTGCTTGAGATCGCCAGTCTCTCGCTCTTCGTCTTTGGATTCTTCCCCATTAAATCAGCTCTCTCCGGTGTCAGTGGACCAGAGAGTTTCCGGCCTTCCTCACGCGATTCGGTTGAGGAT...

Protein

Download Protein FASTA

236 aa · TkA04G233160|TK1151|PROTEIN

MAKFWVVTSCSSGSKLLHHSPFPSNLPNSLIFVSSSSKFAAIPQLQFCLRSPVSRSSSLDSSPLNQLSPVSVDQRVSGLPHAIRLRIKMSQLCILASLNHCTSILQMGTRLFEDIRSHRTKLLVYNLWLNDEGIYKLDFDGDDEAYVSMLYLRKLKNFKIFLRGEPITQFNIEDELKCTEVVTYSPQVSSMKAAIVETTLGFIKVAPALPITGFNIYHKNCLIRVNMFLEFMTLII

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G233160`
TK1151 ID	TkA04G233160
OH-1004 ID	LXL04_039326
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 95.339 / OH-1004 66.176 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G233160

Location Chr04:59190619-59191965 (-)

Description Similar to MORC1: Protein MICRORCHIDIA 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36290`	Mediator of defense signaling triggered by distinct classes of R proteins.	MORC family ATPases required for heterochromatin condensation and gene silencing.2012 · DOI: 10.1126/science.1221472 Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers.2014 · DOI: 10.1073/pnas.1406611111
`At4g36280`	Mediator of defense signaling triggered by distinct classes of R proteins.	Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco.2010 · DOI: 10.1105/tpc.109.071662 CRT1 is a nuclear-translocated MORC endonuclease that participates in multiple levels of plant immunity.2012 · DOI: 10.1038/ncomms2279 Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers.2014 · DOI: 10.1073/pnas.1406611111
`At4g36270`	Exhibits ATPase activity.	No verified direct reference in this release
`At5g50780`	Exhibits ATPase activity.	Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes.2016 · DOI: 10.1371/journal.pgen.1005998
`At4g24970`	Exhibits ATPase activity.	Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes.2016 · DOI: 10.1371/journal.pgen.1005998

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039326 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002230 positive regulation of defense response to virus by host Biological Process

GO:0006281 DNA repair Biological Process

GO:0006282 regulation of DNA repair Biological Process

GO:0006325 chromatin organization Biological Process

GO:0006506 GPI anchor biosynthetic process Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0034052 positive regulation of plant-type hypersensitive response Biological Process

GO:0051607 defense response to virus Biological Process

GO:0060966 regulation of gene silencing by regulatory ncRNA Biological Process

GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process

KEGG gene cross-reference

ath:AT1G19100

ath:AT4G36270

ath:AT4G36280

ath:AT4G36290

hsa:54872

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.566

Rank 1 · TkA04G233160 · TK1151

Nucleus0.188

Rank 2 · TkA04G233160 · TK1151

Cytoplasm0.117

Rank 3 · TkA04G233160 · TK1151

Mitochondrion0.107

Rank 4 · TkA04G233160 · TK1151

Endoplasmic reticulum0.078

Rank 5 · TkA04G233160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17942Morc6_S5145-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G233160	`PF17942`	Morc6_S5	145	225	3.4e-24	86.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WV6`	Arabidopsis thaliana	sp\|Q84WV6\|MORC1_ARATH Protein MICRORCHIDIA 1	46.600%	Swiss-Prot	Low
`Q5FV35`	Arabidopsis thaliana	sp\|Q5FV35\|MORC2_ARATH Protein MICRORCHIDIA 2	43.900%	Swiss-Prot	Low
`F4JPP0`	Arabidopsis thaliana	sp\|F4JPP0\|MORC3_ARATH Protein MICRORCHIDIA 3	44.900%	Swiss-Prot	Low
`F4KAF2`	Arabidopsis thaliana	sp\|F4KAF2\|MORC4_ARATH Protein MICRORCHIDIA 4	32.200%	Swiss-Prot	Low
`F4JRS4`	Arabidopsis thaliana	sp\|F4JRS4\|MORC7_ARATH Protein MICRORCHIDIA 7	30.500%	Swiss-Prot	Low

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