Gene Card
Gene overview
cDNA / CDS / Protein Sequences
770 bp · TkA04G177850|TK1151|cDNA
ATTCATAAGACAAGAGATCCAATTTTAATGTCGTATTCATTCGTATAAGGTTAACCCTAGAATCTAGATTGCTGCAGCCCCATCTCTCGCTCATCTCCGTCACTCAGGTCTCAGCTCATCAATCGTTTCACTAGCTTGGTTTAGCGATGGCTCCTGCTAAAGCCGACACTACAAAGAAAGGTGATGCTAAAGCTCAGGCTTTAAAGACAGCAAAGGCTGTGAAAACAGGTTCAACATTCAAAAAGAAAGCTAAGAAGATC...
465 bp · TkA04G177850|TK1151|CDS
ATGGCTCCTGCTAAAGCCGACACTACAAAGAAAGGTGATGCTAAAGCTCAGGCTTTAAAGACAGCAAAGGCTGTGAAAACAGGTTCAACATTCAAAAAGAAAGCTAAGAAGATCAGGACAAAAGTTACATTCCATCGTCCAAGAACTTTGAAGACAGATAGGAACCCTAAGTATCCTCGAATCAGTGCCCCACCAAGAAACAAATTGGACCATTATCAGATTCTCAAGTACCCATTGACTACAGAGTCTGCCATGAAGAA...
Protein
Download Protein FASTA154 aa · TkA04G177850|TK1151|PROTEIN
MAPAKADTTKKGDAKAQALKTAKAVKTGSTFKKKAKKIRTKVTFHRPRTLKTDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G177850 |
|---|---|
| TK1151 ID | TkA04G177850 |
| OH-1004 ID | LXL04_021966 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 97.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G177850 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:46027416-46028918 (+) | |||||||||
| Description | Similar to RPL23A: 60S ribosomal protein L23a | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0006979 response to oxidative stress Biological Process GO:0009409 response to cold Biological Process GO:0009644 response to high light intensity Biological Process GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component GO:0022625 cytosolic large ribosomal subunit Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G39460 ath:AT3G55280 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03939Ribosomal_L23eN14-64 aaPF27077CsxA19-40 aaPF00276Ribosomal_L2331-40 aaPF00276Ribosomal_L2373-134 aaPF27077CsxA73-147 aaPF03939Ribosomal_L23eN106-124 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G177850 | PF03939 | Ribosomal_L23eN | 14 | 64 | 9.1e-19 | 68.0 |
| TkA04G177850 | PF27077 | CsxA | 19 | 40 | 0.012 | 16.2 |
| TkA04G177850 | PF00276 | Ribosomal_L23 | 31 | 40 | 8.3e-14 | 52.5 |
| TkA04G177850 | PF00276 | Ribosomal_L23 | 73 | 134 | 8.3e-14 | 52.5 |
| TkA04G177850 | PF27077 | CsxA | 73 | 147 | 0.012 | 16.2 |
| TkA04G177850 | PF03939 | Ribosomal_L23eN | 106 | 124 | 9.1e-19 | 68.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.