Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1414 bp · TkA04G115680|TK1151|cDNA
TAATTATTTGGATGTACAATGCGACTAACATTTCGAGCATAAATATACGAAGCACTCGTCTCTGTTTCTGTGTATATTTCAAGGGACCATACTTTAAACACAGAAATGGCTCAAACCACTCCCAATCACAAGCTCACAGTCTCCGGTTGGGCCGCACATGACAACTCCGGCCTAATCACTCCATACACATTCAAGAGAAGAGTGAATGGACCCGATGATGTTTCCATCAAAATCTTGTATTGCGGGATATGCCACACAGA...
1083 bp · TkA04G115680|TK1151|CDS
ATGGCTCAAACCACTCCCAATCACAAGCTCACAGTCTCCGGTTGGGCCGCACATGACAACTCCGGCCTAATCACTCCATACACATTCAAGAGAAGAGTGAATGGACCCGATGATGTTTCCATCAAAATCTTGTATTGCGGGATATGCCACACAGATATCCACCACGTCAAAGACGCTTGGGGTATCACTAACTACCCGGTCATTCCCGGGCATGAAATAACAGGACTAATAACTGAAGTTGGGAGCAACGTGAAAGGGTT...
Protein
Download Protein FASTA360 aa · TkA04G115680|TK1151|PROTEIN
MAQTTPNHKLTVSGWAAHDNSGLITPYTFKRRVNGPDDVSIKILYCGICHTDIHHVKDAWGITNYPVIPGHEITGLITEVGSNVKGFKIGDRVGVGCLAASCLDCEFCNDSLENYCDKIQLTYNGIFWDGSITYGGYSEMLVFDHRYVVHVPESLPMDATAPLLCAGITVYAPMIDSKLHELTGKRIGVMGLGGLGHVAIKFGKAFGHHVTVISTSPSKEKEARERLGADDFIISTDPKQMQSKRRTLDFILDTVAAPHS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G115680 |
|---|---|
| TK1151 ID | TkA04G115680 |
| OH-1004 ID | LXL04_035687 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G115680 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:30050386-30053869 (+) | ||||||||||||
| Description | Similar to CAD6: Probable cinnamyl alcohol dehydrogenase 6 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0009809 lignin biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0048046 apoplast Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0045551 cinnamyl-alcohol dehydrogenase activity Molecular Function GO:0046029 mannitol dehydrogenase activity Molecular Function GO:0050268 coniferyl-alcohol dehydrogenase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT2G21730 ath:AT2G21890 ath:AT4G39330 dosa:Os04g0229100 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08240ADH_N35-153 aaPF00148Oxidored_nitro171-249 aaPF00208ELFV_dehydrog172-216 aaPF028262-Hacid_dh_C178-225 aaPF13241NAD_binding_7180-227 aaPF01262AlaDh_PNT_C184-265 aaPF22660RS_preATP-grasp-like185-218 aaPF16912Glu_dehyd_C186-281 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G115680 | PF08240 | ADH_N | 35 | 153 | 3.1e-27 | 95.6 |
| TkA04G115680 | PF00148 | Oxidored_nitro | 171 | 249 | 0.15 | 11.6 |
| TkA04G115680 | PF00208 | ELFV_dehydrog | 172 | 216 | 0.33 | 11.3 |
| TkA04G115680 | PF02826 | 2-Hacid_dh_C | 178 | 225 | 5.1e-06 | 26.7 |
| TkA04G115680 | PF13241 | NAD_binding_7 | 180 | 227 | 0.11 | 13.9 |
| TkA04G115680 | PF01262 | AlaDh_PNT_C | 184 | 265 | 0.003 | 17.7 |
| TkA04G115680 | PF22660 | RS_preATP-grasp-like | 185 | 218 | 0.048 | 14.8 |
| TkA04G115680 | PF16912 | Glu_dehyd_C | 186 | 281 | 0.22 | 11.7 |
| TkA04G115680 | PF02254 | TrkA_N | 189 | 227 | 0.28 | 12.2 |
| TkA04G115680 | PF00107 | ADH_zinc_N | 194 | 316 | 1.9e-21 | 77.1 |
| TkA04G115680 | PF13602 | ADH_zinc_N_2 | 227 | 343 | 0.00015 | 23.4 |
| TkA04G115680 | PF22660 | RS_preATP-grasp-like | 302 | 335 | 0.048 | 14.8 |
| TkA04G115680 | PF00107 | ADH_zinc_N | 332 | 358 | 1.9e-21 | 77.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.