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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G544190
Reference: TK1151 Chr: Chr03 Coordinates: 137229399-137233425 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1849 bp · TkA03G544190|TK1151|cDNA

GAAAGTCTCGCCGTTCAACATCTTCGGGGCTTCTCCAACATCTCTCCTCACTCGAGCAGAGATGCCAGGGCCAACAGTGGAGTTGGAGCTACCAGTGGAACCACAATCGCTGAAGAAGCTCAGCCTTAAATCCCTAAAACGGGCTCTCGATCTCTTTTCTCCTGTTCACTCTCAGTTCCCTCCTCCCGACCCCGAAAGCAAGAAGATACGGTTGAGCCTTAAGCTACACGTTGAGTATGGTGGAATCAAAAGCGTTCCAA...

CDS

Download CDS FASTA

1422 bp · TkA03G544190|TK1151|CDS

ATGCCAGGGCCAACAGTGGAGTTGGAGCTACCAGTGGAACCACAATCGCTGAAGAAGCTCAGCCTTAAATCCCTAAAACGGGCTCTCGATCTCTTTTCTCCTGTTCACTCTCAGTTCCCTCCTCCCGACCCCGAAAGCAAGAAGATACGGTTGAGCCTTAAGCTACACGTTGAGTATGGTGGAATCAAAAGCGTTCCAAATCAGCCTAACAAAAGTTCCTCACAAAATCAAGCTGCACCTTCAAGCTCAAATGCTCTTGT...

Protein

Download Protein FASTA

473 aa · TkA03G544190|TK1151|PROTEIN

MPGPTVELELPVEPQSLKKLSLKSLKRALDLFSPVHSQFPPPDPESKKIRLSLKLHVEYGGIKSVPNQPNKSSSQNQAAPSSSNALVLSEASKKGDLTTTTPVQTKNLGDGTSSGKSISIISSHGTSERNLSTAALMERIPSRWPRPAWHAPWKNYRVISGHLGWVRSIAFDPSNQWFCTGSADRTIKIWDVGTGRLRLTLTGHIEQVRGLAVSTRHTYMFSAGDDKLVKCWDLEQNKVIRSYHGHLSGVYCLALHPTID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G544190
TK1151 IDTkA03G544190
OH-1004 IDLXL04_024463
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)80.100
Protein coverage (%)TK1151 29.387 / OH-1004 37.746
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G544190
LocationChr03:137229399-137233425 (+)
DescriptionSimilar to At4g06676: Protein EI24 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15900 Pleiotropic regulator of glucose, stress and hormone responses.
Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322
SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.2001 · DOI: 10.1093/emboj/20.11.2742
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607
Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.106.049965
Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.2008 · DOI: 10.1105/tpc.107.055418
Modulation of O-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling.2009 · DOI: 10.1111/j.1365-313x.2009.03935.x
Pleiotropic regulatory locus 1 (PRL1) integrates the regulation of sugar responses with isoprenoid metabolism in Arabidopsis.2010 · DOI: 10.1093/mp/ssp100
Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis.1998 · DOI: 10.1101/gad.12.19.3059
At3g16650 Pleiotropic regulator. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006396 RNA processing Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006897 endocytosis Biological Process
GO:0006955 immune response Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009749 response to glucose Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0010154 fruit development Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0010215 cellulose microfibril organization Biological Process
GO:0016192 vesicle-mediated transport Biological Process
KEGG gene cross-reference
ath:AT3G16650
ath:AT3G43300
ath:AT4G06676
ath:AT4G15900
mmu:53317
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.763
Rank 1 · TkA03G544190 · TK1151
Cytoplasm0.251
Rank 2 · TkA03G544190 · TK1151
Cell membrane0.043
Rank 3 · TkA03G544190 · TK1151
Mitochondrion0.026
Rank 4 · TkA03G544190 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA03G544190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25178Beta-prop_WDR41150-296 aa
PF25174Beta-prop_THOC3153-261 aa
PF00400WD40154-191 aa
PF24807WD40_CDC20-Fz154-218 aa
PF25391WD40_Gbeta154-295 aa
PF24105Beta-prop_CAF1B_HIR1154-196 aa
PF24782WD40_MABP1-WDR62_2nd154-234 aa
PF24807WD40_CDC20-Fz156-283 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G544190PF25178Beta-prop_WDR411502961.4e-1557.7
TkA03G544190PF25174Beta-prop_THOC31532617e-42144.0
TkA03G544190PF00400WD401541911.5e-49165.0
TkA03G544190PF24807WD40_CDC20-Fz1542182.5e-40139.3
TkA03G544190PF25391WD40_Gbeta1542952.4e-2796.6
TkA03G544190PF24105Beta-prop_CAF1B_HIR11541965.9e-2382.2
TkA03G544190PF24782WD40_MABP1-WDR62_2nd1542341.2e-1764.7
TkA03G544190PF24807WD40_CDC20-Fz1562832.5e-40139.3
TkA03G544190PF25047Beta-prop_TEP1_2nd1562521.9e-1867.3
TkA03G544190PF25168Beta-prop_WDR36-Utp21_2nd1571979.7e-2588.2
TkA03G544190PF23869Beta-prop_WDR75_1st1571956.8e-1246.0
TkA03G544190PF30552CFAP251_N1571987.5e-0832.6
TkA03G544190PF25173Beta-prop_WDR3_1st1582761.1e-51175.9
TkA03G544190PF24814WD40_Prp191582814.4e-48164.5
TkA03G544190PF25172Beta-prop_WDR3_2nd1582754.7e-33115.4
TkA03G544190PF23419WD40_RFWD31581943.5e-1040.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42384Arabidopsis thalianasp|Q42384|PRL1_ARATH Protein pleiotropic regulatory locus 179.700%Swiss-ProtHigh
Q39190Arabidopsis thalianasp|Q39190|PRL2_ARATH Protein pleiotropic regulator PRL263.800%Swiss-ProtHigh

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