TkA03G499170 | RubberDandelionOmics

Gene overview

TkA03G499170

Reference: TK1151 Chr: Chr03 Coordinates: 125281177-125291045 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1941 bp · TkA03G499170|TK1151|cDNA

AAAGCTAGTACCGTAAAGAAAATACGGACTGCAAAAACAACAATTTTAACATGACGACTGAGGCCACTGGAATCATCAATCAATCTTTTGAAAGGCGTTCTGCCGATTACAAACCAAACATTTGGAATTACGATCTCCTACAATCTCTGCAATGTGAATTTCATGAAGAAGAATATAGATTACAAGTTCAGAAGGCTAGAGAAGAAGTTAAGAGCTTATTTGTTGAGACAGTGGAACCTGTGGCGAAGTTAGAGCTTTTA...

CDS

Download CDS FASTA

1290 bp · TkA03G499170|TK1151|CDS

ATGAGGTTGCATGGGTGCAATATTTCCCAAGATATGCTGAAAGGGTTTGTAGACAATCCGGAGAATAACATGAACGTAAATGTAAAAGAAATGGTTAGTATTTTTGAGGCTTCTCATCTAGCCTTGGAAGGCGAAGACATATTAGAAAAGGCTCAAGTTGTAGCATCAATATTTTTGAAGAATGTTTATCAATATTTAGATGTCGAGGGTGGAAAAGAAGTTCATGATGCATTGCAACTCCCTTTCAACTTGCGAGTGGA...

Protein

Download Protein FASTA

429 aa · TkA03G499170|TK1151|PROTEIN

MRLHGCNISQDMLKGFVDNPENNMNVNVKEMVSIFEASHLALEGEDILEKAQVVASIFLKNVYQYLDVEGGKEVHDALQLPFNLRVECFNIRNHIHGYAKVSHSNQNLLKLAKLNCNMIQVVHQRELKDILRWWKKVGAMENLCFTRNRVVESYLWAVGVAFEAHYGYLRKCLTKVITLVLIIDDLYDVFGTLDEMETFTNVVERWTTEGSESLPEPMKFCLNILYDSVDEISNEILKEKGYTVKPHIQNSWIDFCKGLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G499170`
TK1151 ID	TkA03G499170
OH-1004 ID	LXL04_010113
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.436 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G499170`
Location	Chr03:125281177-125291045 (+)
Description	Similar to TPS7: Alpha-farnesene synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010113` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0016102 diterpenoid biosynthetic process Biological Process GO:0046246 terpene biosynthetic process Biological Process GO:0051762 sesquiterpene biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0010333 terpene synthase activity Molecular Function GO:0010334 sesquiterpene synthase activity Molecular Function GO:0016740 transferase activity Molecular Function GO:0034009 isoprene synthase activity Molecular Function GO:0052578 alpha-farnesene synthase activity Molecular Function
KEGG gene cross-reference	mdm:103446592 rcu:8261702 rcu:8267421 vvi:100232956 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.667

Rank 1 · TkA03G499170 · TK1151

Plastid0.324

Rank 2 · TkA03G499170 · TK1151

Nucleus0.162

Rank 3 · TkA03G499170 · TK1151

Endoplasmic reticulum0.053

Rank 4 · TkA03G499170 · TK1151

Peroxisome0.052

Rank 5 · TkA03G499170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01397Terpene_synth1-63 aa

PF17005WD40_like24-150 aa

PF11861DUF3381113-138 aa

PF19086Terpene_syn_C_2116-144 aa

PF03936Terpene_synth_C136-373 aa

PF19086Terpene_syn_C_2175-373 aa

PF01397Terpene_synth235-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G499170	`PF01397`	Terpene_synth	1	63	2.3e-11	44.4
TkA03G499170	`PF17005`	WD40_like	24	150	0.043	13.9
TkA03G499170	`PF11861`	DUF3381	113	138	0.13	12.7
TkA03G499170	`PF19086`	Terpene_syn_C_2	116	144	2.5e-49	168.4
TkA03G499170	`PF03936`	Terpene_synth_C	136	373	3.4e-77	259.7
TkA03G499170	`PF19086`	Terpene_syn_C_2	175	373	2.5e-49	168.4
TkA03G499170	`PF01397`	Terpene_synth	235	245	2.3e-11	44.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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